PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

WRKY

Protein Properties

Length: 386aa MW: 42685.3 Da PI: 5.6204

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV58288.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.6	3.9e-31	196	254	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ KZV58288.1 196 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSEHNHP 254 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.765	190	256	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.8E-31	190	256	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-26	193	256	IPR003657	WRKY domain
SMART	SM00774	4.9E-38	195	255	IPR003657	WRKY domain
Pfam	PF03106	4.8E-26	197	254	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MENYEGDLAD IVRASVSGNS AASTSITDMQ VPSSQIEWYS INHSDYDFGN PFNQLGDPLR 60 IDAPVPGFVL NPDRMKSNSS SNGGLEAFGE NHMIMDDHEM STKRSCNLFS RTLYVSSNPA 120 LSPCDPSSSS MLLSNDPVLA FPDSSKLGSL LESPALQISP PRNPGIKRRK SQAKKVVCIP 180 APAPANTRHS GEVVPSDLWA WRKYGQKPIK GSPFPRGYYR CSSSKGCSAR KQVERSRTDP 240 SMLVITYTSE HNHPWPTQRN ALAGSTRSHP VKTNNPAARK SPNARALKPS SPNEEKKEVF 300 ATDCAILKEE KDPDFDNQLE MDDHYEDFFG NLGEIEPDPL DFLFTQGFSG DEGSENKTLD 360 PLSFYDWPEN CDYPAARTHH QNQPGP

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MENYEGDLAD IVRASVSGNS AASTSITDMQ VPSSQIEWYS INHSDYDFGN PFNQLGDPLR  60
IDAPVPGFVL NPDRMKSNSS SNGGLEAFGE NHMIMDDHEM STKRSCNLFS RTLYVSSNPA  120
LSPCDPSSSS MLLSNDPVLA FPDSSKLGSL LESPALQISP PRNPGIKRRK SQAKKVVCIP  180
APAPANTRHS GEVVPSDLWA WRKYGQKPIK GSPFPRGYYR CSSSKGCSAR KQVERSRTDP  240
SMLVITYTSE HNHPWPTQRN ALAGSTRSHP VKTNNPAARK SPNARALKPS SPNEEKKEVF  300
ATDCAILKEE KDPDFDNQLE MDDHYEDFFG NLGEIEPDPL DFLFTQGFSG DEGSENKTLD  360
PLSFYDWPEN CDYPAARTHH QNQPGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-25	170	257	2	80	Disease resistance protein RRS1
5w3x_D	2e-25	170	257	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV58288.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022892495.1	1e-119	probable WRKY transcription factor 35
Swissprot	O64747	3e-76	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A2G9I5D2	1e-133	A0A2G9I5D2_9LAMI; Uncharacterized protein
STRING	XP_010036632.1	1e-110	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6701	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-78	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]