PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57651.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 775aa    MW: 85011.5 Da    PI: 6.9676
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57651.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-1377121147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a +++  + Wk+I + +g  ++  q++s+ qky
       KZV57651.1  77 RESWTEEEHDRFLEALHLFDRD-WKKIEAFVG-SKSVIQIRSHAQKY 121
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.86E-1671127IPR009057Homeodomain-like
PROSITE profilePS5129415.96772126IPR017930Myb domain
TIGRFAMsTIGR015573.7E-1775124IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.7E-675127IPR009057Homeodomain-like
SMARTSM007174.2E-1176124IPR001005SANT/Myb domain
PfamPF002491.9E-1177121IPR001005SANT/Myb domain
CDDcd001674.45E-879122No hitNo description
SuperFamilySSF511266.44E-101339741IPR011050Pectin lyase fold/virulence factor
Gene3DG3DSA:2.160.20.102.4E-108344728IPR012334Pectin lyase fold
PfamPF002953.6E-37444725IPR000743Glycoside hydrolase, family 28
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0004650Molecular Functionpolygalacturonase activity
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MVSAYQIPPP DSDFIHFDSD FYVAGGGGGR EFMDIGIVGA KRSEGDMNLP QMVPFVSSAM  60
EDSNKKVRKP YTITKSRESW TEEEHDRFLE ALHLFDRDWK KIEAFVGSKS VIQIRSHAQK  120
YFLKVQKNGK TEHVPPPRPK RKASHPYPQK ASKNVSAVSQ ATGALKSSAL LECGHTASPD  180
PVLGLRSPVC SVPLSPWTYN IVPTGTLSHV SKDDIEAVGF TMSQNCSSSV IDSTLRAWKS  240
DKINYQGIGN QSKAVRVMPD FAQVYSYIGS IFDPKASDHL QRLRKMDPVN VETILRLMKN  300
LSINLASSEF EDHILVLVLG VVIGVECRKA RILESFEYSA ISCRSHSASI EDFGGVGDGV  360
TLNTNAFQQA VNQLSQYGSD GGAQLFVPAG KWLTGSFNLT SHFTLFLHSD AVLLASQDIS  420
SWPVVDPLPS YGHGRDAAGG RYISLIFGTN LTDVVITGEN ATIDGKGELW WQQFHRKKLK  480
YTRPYLIEIM HSDNIQISNL TLVNSPSWNI HPVYSSNIII QGITILAPIT SPNTDGINPD  540
SCTNTRIEDN YIVSGDDCIA VKSGWDEYGI SYGMPTKQLI IRRLTCVSPY SAAIALGSEM  600
SGGIEDVRAQ DITAIHTESG VRIKTAVGRG GYVKDIYVKG MNLHTMKWVF WMTGNYGSHA  660
DNHYDPNALP KITGINYRDV VAENVSMAAR LEGISGDPFT GICISNVTIG MALKAKKYPW  720
TCAEVEGISS GVVPSPCNLL PSQGGQTQGI CDFPSDTLAI ETRELQKCSY SMKYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jur_A9e-4334670926410Exo-poly-alpha-D-galacturonosidase
3jur_B9e-4334670926410Exo-poly-alpha-D-galacturonosidase
3jur_C9e-4334670926410Exo-poly-alpha-D-galacturonosidase
3jur_D9e-4334670926410Exo-poly-alpha-D-galacturonosidase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57651.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092828.10.0probable polygalacturonase
SwissprotA7PZL30.0PGLR_VITVI; Probable polygalacturonase
TrEMBLA0A2G9HRK60.0A0A2G9HRK6_9LAMI; Uncharacterized protein
STRINGXP_009762710.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.27e-86MYB_related family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]