PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV57540.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Trihelix
Protein Properties Length: 310aa    MW: 35234.7 Da    PI: 6.5427
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV57540.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.21.4e-1524114186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ + +L++a  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ l+k+yk +k+  ++ + + +s++p+f +le
  KZV57540.1  24 CWSEEATWTLVDAWGRRYMELNRGNLRQKDWQEVADAVnarhgHTKKTRRTDVQCKNRIDTLKKKYKIEKTKISESNGTFTSSWPFFPRLE 114
                 7*************************************99888888999*********************999999999999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2422114No hitNo description
SMARTSM005950.001532121IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGDLTESSTL QTPPSRQLPF REDCWSEEAT WTLVDAWGRR YMELNRGNLR QKDWQEVADA  60
VNARHGHTKK TRRTDVQCKN RIDTLKKKYK IEKTKISESN GTFTSSWPFF PRLEYLVGSN  120
SHKNQNDKVT PLSVVPFVAS QYTPPSSLPS PPMAVPLPYR KSPSSAMVTP VILPQKRPMP  180
SPPVDELYFK RNYSVMAAAA AAADEDDGES EGAEAEGSED RGAEVEDDGE DGMGRLAKAI  240
ERFGEIYEKV EGMKQRQMVE LEKQRMQFAK DLEVQRMQLF MDTQVQLEKI KRDKRSGSAD  300
GMQHNIMYSC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV57540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101388.11e-153trihelix transcription factor ASIL1 isoform X3
RefseqXP_020546998.11e-152trihelix transcription factor ASIL1 isoform X1
RefseqXP_020546999.11e-152trihelix transcription factor ASIL1 isoform X1
RefseqXP_020547000.11e-152trihelix transcription factor ASIL1 isoform X1
RefseqXP_020547001.11e-153trihelix transcription factor ASIL1 isoform X2
TrEMBLA0A2Z7D7I71e-157A0A2Z7D7I7_9LAMI; Uncharacterized protein
STRINGMigut.M01037.1.p1e-133(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-53sequence-specific DNA binding transcription factors