PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56546.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 267aa    MW: 29136 Da    PI: 10.3919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56546.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.2e-1496140347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r    +Rt+ q+ s+ qky
       KZV56546.1  96 PWTEEEHKLFLYGLQKVGKGNWRGISRDYVRTRTPTQVASHAQKY 140
                      8*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.21189145IPR017930Myb domain
SuperFamilySSF466895.46E-1691145IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-1692143IPR006447Myb domain, plants
SMARTSM007173.7E-1093143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-1095139IPR009057Homeodomain-like
PfamPF002491.6E-1196140IPR001005SANT/Myb domain
CDDcd001672.17E-1096141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MPRFDEPPPA AAGNRGEILL FGVRVKVDPM RKSASMNNIS EFLPVRNADG VNNNDEDFPK  60
AAAAAAEDGI AAGYASADDA VPLPGNGGRD RKRGVPWTEE EHKLFLYGLQ KVGKGNWRGI  120
SRDYVRTRTP TQVASHAQKY FFRRSNLSHR RRRSSVFDIT TDSLAAMSIE KVGNQQDNQP  180
VPGPTAPHLP RASNITRFPV VPFPANVGPV DRANNPSAIL VRPVFILPMP TSSTVVDLQQ  240
VPIQPPPLSN VLSLTSGQDP YTRQILA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00149DAPTransfer from AT1G19000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56546.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071772.14e-88transcription factor MYB1R1
SwissprotQ2V9B02e-61MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A2Z7DCJ80.0A0A2Z7DCJ8_9LAMI; DNA binding protein-like
STRINGXP_009760664.11e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25742351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.22e-46MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]