PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV56297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 423aa MW: 47537.9 Da PI: 5.0749 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113 | 2e-35 | 14 | 104 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d+ +++++sws++g+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ ++ weF++++F +g+++ll++i+ KZV56297.1 14 FLVKTYEMVDDPLTDSIVSWSHTGHSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHLLKNIH 101 9****************************************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k KZV56297.1 102 RRK 104 *98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.71E-36 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.6E-39 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.9E-63 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-20 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-20 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 423 aa Download sequence Send to blast |
MDASNGGSNS PAPFLVKTYE MVDDPLTDSI VSWSHTGHSF VVWNPPEFAR DLLPKYFKHN 60 NFSSFIRQLN TYGFRKIDPD QWEFANEEFI RGQRHLLKNI HRRKPIHSHS GNGNTVPLSD 120 SERELFEKEI EKLQNEKLFL QSEVDRCENE NLEYKYQLRS LGQTLQTINQ RQQQLMAILA 180 QMLQKPGYAS SLLDEVEPHS KKRRLLALNY LHDEANLVEN QSTTLQENSS LPLLNNEVVE 240 KLDSSLTFWE KFLKEIGQTT SQNLHDFNVS SVPSLPSPVV ITEIPASSGD SDLSIPRSSP 300 ECQMGVSPSQ DHGASPELAT SSSFVDIPSI SSIHIDPDSS YKPSAIDVNM SPTKTIDTHT 360 SKDRNQGGRV PSLPVGGNDV FWQQFLTEAP GPSDSQEVQS ERRDLYNRTV LVGLQMNSSI 420 GGI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-27 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-27 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-27 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV56297.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554487.1 | 0.0 | heat stress transcription factor A-4b | ||||
TrEMBL | A0A2G9GL76 | 1e-159 | A0A2G9GL76_9LAMI; Heat shock transcription factor | ||||
STRING | Migut.H02116.1.p | 1e-157 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8435 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45710.1 | 7e-71 | HSF family protein |