PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV56136.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ZF-HD
Protein Properties Length: 304aa    MW: 33011.3 Da    PI: 8.6712
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV56136.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.63e-3354109357
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                   v+YkeC+kNhAaslG+havDGCgEfm s++++ +++++l+CaACgCHRnFHRr++
   KZV56136.1  54 MVTYKECMKNHAASLGSHAVDGCGEFMLSPSSTnSDPTSLTCAACGCHRNFHRRDP 109
                  589**************************999889*******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.2E-2755108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2255113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-2956108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.81957108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.66E-18175245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28179246IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-26184240IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDLDLTPTTS SGDSGNETPP PLSIQIQPIN LLSITNGAVK KPLHRPPPPP LPLMVTYKEC  60
MKNHAASLGS HAVDGCGEFM LSPSSTNSDP TSLTCAACGC HRNFHRRDPG EASPTNVKTP  120
PFLDFRHPNP PWRPSLSPSP PPPQQQPCCL APHMLMTLSS AVATEEQVHQ AAPVTPITGN  180
PLRRKRFRTK FSHEQKEKMQ DFSEKLGWKM QGCDRAAVEE FCRGIGVAKG VLKVWMHNNK  240
STSGKKKLDG GGGNINGGLM MSFESKINRE NEDNSNINGG HFQNEINGGG VRFHVSNNSS  300
SPSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-201852421875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV56136.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070997.15e-94zinc-finger homeodomain protein 10
TrEMBLA0A2Z7DAK80.0A0A2Z7DAK8_9LAMI; Zinc-finger homeodomain protein 11
STRINGXP_010257380.14e-68(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-56homeobox protein 30