PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV55966.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 452aa    MW: 49548.7 Da    PI: 6.964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV55966.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.5e-063423811054
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 + R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  KZV55966.1 342 KVRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 381
                 66889999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.741332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-4338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-12341395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.04E-7342386No hitNo description
Gene3DG3DSA:4.10.280.102.3E-9342390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSDEFHLGRG NWWDSTRNRV DDTGTAPASV SARLNAIANF EWPNDMVDMK SRSSIDSGAA  60
PGGSMVVQTQ SSAASGGGVL TTPNLQMMGL GLSSSQSMDW NQAMFRGGKS ESSFRSMLQE  120
DSNTSNFLEE SGTAASSHEH WRHKLYGGAS SEDSSANDFK QINRGFTLDH QSQFCSQANS  180
NDSTITSGGY QVDSAAAYGL LMSENQQQHN YENRSINYPY PPSGYGHSPG ELMPSWNKFP  240
QSLRTSPPKH PQPLPPAAGS SHLHFTNNTP FWNASATMND ARSGFFPALQ NQIPIAPSFD  300
EKPKNTMEVR DTGMTTKKNN MESSSNKRAR SEMPSPLPAC SKVRKEKMGD RITALQQLVS  360
PFGKTDTASV LSEAIEYIKF LHEQVSVLST PYMKNGAPVQ RQQISDKSKD PEGPRHDLRS  420
RGLCLVPVSS TFPVTQETTV DFWTPTFGGT FR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV55966.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553877.10.0transcription factor bHLH123
SwissprotQ8GXT34e-80BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A2Z7DA360.0A0A2Z7DA36_9LAMI; Basic helix-loop-helix DNA-binding superfamily protein
STRINGcassava4.1_007585m1e-165(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]