PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54573.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 363aa    MW: 40845.9 Da    PI: 7.8072
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54573.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.9e-36251162102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+  +fvv+ + ef++++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkk++k+ll++i+
    KZV54573.1  25 FLTKTYQLVDDPNTDHIVSWGEDDATFVVWRPPEFSRDILPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKEEKHLLCEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    KZV54573.1 113 RRKT 116
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.4E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MALMLDNCEG ILLPLDSHKS VPAPFLTKTY QLVDDPNTDH IVSWGEDDAT FVVWRPPEFS  60
RDILPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKEEKHLLCE IHRRKTAPPP  120
QVALNHQYPI SAQSFFSYPS RVSISPPDSD DQTHNTWCDS PPFSSPINGS YAAVCGSSYD  180
SSFVALSEDN ERLRRNNSVL VSELTHMRKL YDDIIYFVQN HVKPVVPSNS YHSSLFLSNS  240
SKPSPAEIPS NGGSSIQQRP SNQLPISATR FSQMALNSKK ANASIGSFDI NCCYSPSKTS  300
QSTVTILEDG EHQCRTKLFG VPLNSKKRLH AGYKSSMETT NKSRLVLQKD EGLGLNLMPP  360
SPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-202011625131Heat shock factor protein 1
5d5v_B1e-202011625131Heat shock factor protein 1
5d5v_D1e-202011625131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54573.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879895.11e-169heat stress transcription factor B-4-like
SwissprotQ9C6351e-104HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2Z7D4Y30.0A0A2Z7D4Y3_9LAMI; Heat stress transcription factor B-4
STRINGXP_002510200.11e-154(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-93heat shock transcription factor B4