PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53875.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 270aa    MW: 29232.3 Da    PI: 8.3031
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53875.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.13.8e-304106198
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++dC ++p++      ++q++++ +++k++G++ +++l++a pe++r+++++sl+yeA+ r+ +P+yG+vg+++++++ql++ ++ +
  KZV53875.1   4 SCNGCRVLRKGCSDDCSIRPCLewirtSDSQAHATVFLAKFYGRAGLMNLINAGPEHQRPAIFKSLLYEACGRIVNPIYGSVGLLWSGSWQLCENAVAA 102
                 6*********************9999777889*************************************************************999877 PP

      DUF260  95 allk 98 
                 +l +
  KZV53875.1 103 VLNG 106
                 7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9643109IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-244100IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSDDCS IRPCLEWIRT SDSQAHATVF LAKFYGRAGL MNLINAGPEH  60
QRPAIFKSLL YEACGRIVNP IYGSVGLLWS GSWQLCENAV AAVLNGAPIT RVATDAAEAK  120
SGPPLKVYDI RHVSKEDNLS GCGELHRVRT RCRFKRVGKA KKSRVSAASV DESANRSPSH  180
DSSLSHQSEA AEANVERESL ASAETTETDH MTGAETTIDS GEGGCRIELD LTLGLEPFKR  240
CVKPTELKRR LSIGLAEDAS GVCKMKLGLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099556.11e-136LOB domain-containing protein 41
SwissprotQ9M8861e-94LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2G9HGD51e-122A0A2G9HGD5_9LAMI; Uncharacterized protein
STRINGMigut.L00314.1.p1e-117(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-89LOB domain-containing protein 41