PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV53765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28632.7 Da PI: 9.5122 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 1e-12 | 73 | 124 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ + Lr+l+P++ ++++ + a+i+ A++++k+L+ KZV53765.1 73 QRMTHIAVERNRRRLMNEYLTVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 124 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.13E-16 | 71 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.32E-12 | 71 | 128 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-13 | 71 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.199 | 72 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-10 | 73 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-8 | 78 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MALESVASRP NPFSYDFNIH IESINQETEP TAETLIINPN VDPSAKWDFS PPERPRKRRR 60 SMSLKNREEM EKQRMTHIAV ERNRRRLMNE YLTVLRSLMP PSYAQRGDQA SIVGGAINFV 120 KELEQQVQYL QGRKQLNRKN TSGSLFSEFF IFPQYSNING VADIEVTMVE RHANIKISIS 180 DDRRRPKQLP KMVAALHSIR LTVLHLNLTA VHQSVLYSFS VKVEDECQLS TVNEIATAVY 240 QIIQDIYI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 59 | RKRRR |
2 | 55 | 60 | RKRRRS |
3 | 73 | 84 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV53765.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100183.2 | 3e-87 | LOW QUALITY PROTEIN: transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 1e-67 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A1U8AL43 | 5e-82 | A0A1U8AL43_NELNU; transcription factor bHLH94-like | ||||
TrEMBL | A0A1U8B9D6 | 5e-82 | A0A1U8B9D6_NELNU; transcription factor bHLH96 | ||||
STRING | XP_010266731.1 | 8e-83 | (Nelumbo nucifera) | ||||
STRING | XP_010272971.1 | 8e-83 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1996 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-70 | bHLH family protein |
Publications ? help Back to Top | |||
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