PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV53744.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

bZIP

Protein Properties

Length: 346aa MW: 39507.2 Da PI: 7.6751

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV53744.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3e-11	73	108	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 +k+ rr+++NReAAr+sR+RKka++++Le+ + L KZV53744.1 73 DKVLRRLAQNREAARKSRLRKKAYVQQLENSKQRLI 108 7999*************************9776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.8E-8	64	119	No hit	No description
SMART	SM00338	0.0032	70	133	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.668	72	116	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.6E-8	74	107	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	74	110	No hit	No description
PROSITE pattern	PS00036	0	77	92	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-23	158	234	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MNSAATQFVP TRRMGLYEPM HQMDMWEDFK GNNCFDISPS MILDVDGNES EHTSHKMIEP 60 SNKCDEESSR PVDKVLRRLA QNREAARKSR LRKKAYVQQL ENSKQRLIQI EEEIERSRKQ 120 GVCIGRVSDT NLSRSCGSSS VAKFEMEYAE WVEEQNRQVS ELRNGVNSGI GEVEMRSLVD 180 IGMKHYFNLF KMKQRAAKAD AFYLMCGAWK TCAERLLFFW IGGFRPSEFL KVVAPNLEPL 240 EEKQRVDVCN LRQSCQQAED ALSQGMLKLH QIVSETIADV GCGDAMEKLE ALVRFVGQAD 300 HLRGEALQQI CRILTTPKAA LAILALGEYF QRLRALSSLW GSRPYH

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MNSAATQFVP TRRMGLYEPM HQMDMWEDFK GNNCFDISPS MILDVDGNES EHTSHKMIEP  60
SNKCDEESSR PVDKVLRRLA QNREAARKSR LRKKAYVQQL ENSKQRLIQI EEEIERSRKQ  120
GVCIGRVSDT NLSRSCGSSS VAKFEMEYAE WVEEQNRQVS ELRNGVNSGI GEVEMRSLVD  180
IGMKHYFNLF KMKQRAAKAD AFYLMCGAWK TCAERLLFFW IGGFRPSEFL KVVAPNLEPL  240
EEKQRVDVCN LRQSCQQAED ALSQGMLKLH QIVSETIADV GCGDAMEKLE ALVRFVGQAD  300
HLRGEALQQI CRILTTPKAA LAILALGEYF QRLRALSSLW GSRPYH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV53744.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097615.1	1e-164	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X2
Refseq	XP_011097616.1	1e-164	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3
Swissprot	P14232	1e-136	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A2G9GCL2	1e-160	A0A2G9GCL2_9LAMI; Uncharacterized protein
STRING	Migut.L00088.1.p	1e-156	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-127	TGACG motif-binding factor 4

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]