PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53568.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 674aa    MW: 74614.9 Da    PI: 9.5682
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53568.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07575624147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ +        k+Rt  ++k++w ++
       KZV53568.1 575 RRPFTVSEVEALVQAVEKLGTGRWRDVKLSAFdsaKHRTYVDLKDKWKTL 624
                      679***********************9888779**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.83E-8376464IPR029071Ubiquitin-related domain
PROSITE profilePS500539.548381454IPR000626Ubiquitin domain
PROSITE profilePS5129414.321570629IPR017930Myb domain
SMARTSM007172.0E-7574627IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-10575625IPR009057Homeodomain-like
CDDcd116603.88E-17576626No hitNo description
SuperFamilySSF466899.4E-16576657IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQAPPTP RAARSVRRRC LFKSKADVQQ MCAFDLLATV AGKLLLEGGN  60
SPPLLDQVSK KEQLVEGSDG KQEKTENILA DEKSCDQDSY ERNFLAPDPV TENPNAILPH  120
NDPVSRPASG ITTSNCPEKH SSAEHLANDD CKLRLGIFTS VVNPDYSACK IFANNGSDDE  180
IRKHIKMESS VTPNSSTCNG IDLCHPVACD KKPSRLVNSV DDKKLLFCGN HSPCGPPPVN  240
RDNKKLVARD DDDNSSGFTE SQIRIKTFRP SPPIGDSKIR KLLASRPHKV APPVKDDGRY  300
NADAERCKKH ISKRSFKRQR SPRDYPFKKR KFYVCSSMSD SDEGNSGGAI GSSPTLSRRV  360
IKTQDSAAGE RASFHTSNPQ VKLKIRSFRV PELVIEIPET ATVGSLKKTV MDAVNAILGG  420
GLRVGVLLQG KMIRDDNITL SQSGISQDKK MDMLGFSLEP SISQAPLQSF PDNRPCQLLH  480
NDPQPLVRYT PATGISRNGI QHGKLGTPPD HAGNDFDNFV ECDHDSVLSP PEMSLQKPAA  540
QLKAIVPVPK MEPDALAMVP LKKSKRSDSV QRRIRRPFTV SEVEALVQAV EKLGTGRWRD  600
VKLSAFDSAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLA THAYWSQQHA  660
KQHLKSQLDT CLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-535626654107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321330PRDYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53568.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089486.10.0telomere repeat-binding protein 2
RefseqXP_011089488.10.0telomere repeat-binding protein 2
TrEMBLA0A2Z7D8J60.0A0A2Z7D8J6_9LAMI; Telomere repeat-binding protein 5
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-128TRF-like 2