PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53328.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family SBP
Protein Properties Length: 351aa    MW: 37970.8 Da    PI: 8.1647
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53328.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.73e-4271148178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +CqvegC++dls++k y++rhkvC vhsk+ +v+v+gleqrfCqqCsrfh+l efD+ekrsCrrrLa+hnerrrk+q+
  KZV53328.1  71 RCQVEGCNVDLSDVKAYYSRHKVCGVHSKSLNVIVAGLEQRFCQQCSRFHQLPEFDQEKRSCRRRLAGHNERRRKPQP 148
                 6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.2E-3466133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.77869146IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-4070151IPR004333Transcription factor, SBP-box
PfamPF031103.6E-3272145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEKGDSVSSS SSSVSGGSNS LNGLNFGKKI YFEDVGASAL QPKTGGGTAP PPRSPAKKGR  60
TGSVHGGPPP RCQVEGCNVD LSDVKAYYSR HKVCGVHSKS LNVIVAGLEQ RFCQQCSRFH  120
QLPEFDQEKR SCRRRLAGHN ERRRKPQPGS LFSPRYGSLS SSISGNHSNR GSFTVDFTSY  180
PSLTGRESWP VTPTSERAFG NQSPWQSNPP EYIPDLLQGS TTRPSHSGTI GVTSGVCFDG  240
APDSSSALSL LSNQPWNSSA RPLNIGINNF LGTNICTPTA HPTIEQYACP LWSLKGDQVS  300
ETLHETPPDL GLGQIYQSSD NQYTGELGER FHELEHSRGY DSSGQHVNWS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31721451184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53328.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075166.11e-137squamosa promoter-binding-like protein 9
TrEMBLA0A2Z7D7V90.0A0A2Z7D7V9_9LAMI; Uncharacterized protein
STRINGVIT_08s0007g06270.t011e-116(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-48squamosa promoter binding protein-like 9