PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV52473.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

CAMTA

Protein Properties

Length: 796aa MW: 90290.4 Da PI: 7.3223

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV52473.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	140.7	4.2e-44	5	86	36	117
CG-1 36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 gs +L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg++++l+cyYah+e+n++fqrr+ywlLe +l +iv+vhylev KZV52473.1 5 GGSTFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDMLHCYYAHGEDNENFQRRSYWLLEPDLMHIVFVHYLEV 86 69******************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	3.8E-44	1	87	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	62.348	1	92	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.2E-37	5	86	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF48403	2.02E-16	424	540	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.5E-15	437	544	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.61E-13	443	534	No hit	No description
PROSITE profile	PS50297	17.157	446	550	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.5E-7	451	539	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.006	479	508	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.751	479	511	IPR002110	Ankyrin repeat
SMART	SM00248	1300	518	547	IPR002110	Ankyrin repeat
SMART	SM00015	0.11	655	677	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.23E-7	655	704	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	8.389	657	685	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0024	658	676	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0021	678	700	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.523	679	703	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.4E-4	681	700	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
MFVSGGSTFL FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSIDML HCYYAHGEDN 60 ENFQRRSYWL LEPDLMHIVF VHYLEVRDNH QSNSRFHSYP ESPLHDDSHS ALTSSYDMLS 120 SSEYPSLRLH NLTMNQNLIS VLPHDCCSKL SNEKHLFLNQ ENNMEGNPPG EHRDQSEQRN 180 LQAVLTEMGI RSAVNPNLEN IKDTVGNENY SFLLKKPLIN SLQKDESLKK VDSFTRWMAR 240 ELGEADELDM LSNNRLSWSI MGSEYDSNIS AQLEVESDSL SSILGDQLFS IIDFSPSWTY 300 SNWECKVLND YLCSVCVGNL TQCVIELVLI HLHVHNPNIG VTDVNEGVVT VMHLYRRLEM 360 LLCRRPSGSP IGFNEDDLEK KNLMQKIVSI MEENCHDAKL TQKNNTVWQM VTAEVLLEKQ 420 LKEKFCYWLL QRRNEEDTGP MVVDDMGQGI LHLAAALGFN WVFKSIIIPG VSLDFRDVNG 480 WTALHWAAFY GREDTVATLF SLGAAPGALT DPSAEYPLGR TPADLASSSG HKGISGFLAE 540 TSLTTHLTTL KMNDTAEDGM PDVSGTSTIH TVSERLAVLA TTEEEVQDTL SLKDSLAAIC 600 NASQAAARIH QIFRIQSFQR KQFVEQGCDE LLSSDERAIS LVAGKSSRSG RSDGMVNAAA 660 VHIQKKFRGW KKRKEFLQIR QKVVKIQAHV RGHQARKKHK SILWPVGILE KVILRWRRKG 720 RGFRGFGSDG VQVGVNIQGT KSPEDNYDVL KEGRRQTEQR MQKALARVKS MAQYPEARAQ 780 YRRLLAAAEE FREAKV

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

MFVSGGSTFL FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSIDML HCYYAHGEDN  60
ENFQRRSYWL LEPDLMHIVF VHYLEVRDNH QSNSRFHSYP ESPLHDDSHS ALTSSYDMLS  120
SSEYPSLRLH NLTMNQNLIS VLPHDCCSKL SNEKHLFLNQ ENNMEGNPPG EHRDQSEQRN  180
LQAVLTEMGI RSAVNPNLEN IKDTVGNENY SFLLKKPLIN SLQKDESLKK VDSFTRWMAR  240
ELGEADELDM LSNNRLSWSI MGSEYDSNIS AQLEVESDSL SSILGDQLFS IIDFSPSWTY  300
SNWECKVLND YLCSVCVGNL TQCVIELVLI HLHVHNPNIG VTDVNEGVVT VMHLYRRLEM  360
LLCRRPSGSP IGFNEDDLEK KNLMQKIVSI MEENCHDAKL TQKNNTVWQM VTAEVLLEKQ  420
LKEKFCYWLL QRRNEEDTGP MVVDDMGQGI LHLAAALGFN WVFKSIIIPG VSLDFRDVNG  480
WTALHWAAFY GREDTVATLF SLGAAPGALT DPSAEYPLGR TPADLASSSG HKGISGFLAE  540
TSLTTHLTTL KMNDTAEDGM PDVSGTSTIH TVSERLAVLA TTEEEVQDTL SLKDSLAAIC  600
NASQAAARIH QIFRIQSFQR KQFVEQGCDE LLSSDERAIS LVAGKSSRSG RSDGMVNAAA  660
VHIQKKFRGW KKRKEFLQIR QKVVKIQAHV RGHQARKKHK SILWPVGILE KVILRWRRKG  720
RGFRGFGSDG VQVGVNIQGT KSPEDNYDVL KEGRRQTEQR MQKALARVKS MAQYPEARAQ  780
YRRLLAAAEE FREAKV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV52473.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092424.1	0.0	calmodulin-binding transcription activator 2
Swissprot	Q6NPP4	1e-166	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A2Z7CZF2	0.0	A0A2Z7CZF2_9LAMI; Calmodulin-binding transcription activator 2
STRING	Migut.B00609.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2230	21	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.1	0.0	ethylene induced calmodulin binding protein

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]