PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV52246.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 32131.7 Da PI: 6.4063 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.7e-10 | 12 | 61 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL+ +++ +k+L KZV52246.1 12 RKVQKADREKLRRDRLNEQFTELGNTLDPD----RPKNDKASILTDTIQILKDL 61 5677889********************997....79**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-14 | 8 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-13 | 9 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.281 | 11 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-8 | 12 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.68E-7 | 12 | 65 | No hit | No description |
SMART | SM00353 | 7.4E-7 | 17 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEAETKDSTN ARKVQKADRE KLRRDRLNEQ FTELGNTLDP DRPKNDKASI LTDTIQILKD 60 LASQVDRLKA EYTALTEESR ELTQEKNDLR EEKTSLKSDI ESLNAQYQQR LRAMYPWAGM 120 DHSVVMHPSS YPFPMPVPIP TGPIPLHPSM QPYPFYGNQN STVPNPCSTY VPYMPHNSML 180 EQQSTLLVSQ VMQQGSVSHN SSKQDHMNKS PDGESRIEKS DDSNDIATDL ELKTPGSASE 240 QDSSLKQRKA KKISRKETSI TDVSSSSGCS STHSVQPSSC NSIAGGKN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV52246.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092862.1 | 1e-166 | transcription factor bHLH121 | ||||
Swissprot | Q9LT23 | 7e-91 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A2Z7D554 | 0.0 | A0A2Z7D554_9LAMI; Uncharacterized protein | ||||
STRING | Solyc01g111130.2.1 | 1e-133 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5456 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 1e-86 | bHLH family protein |
Publications ? help Back to Top | |||
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