PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV52140.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Dof
Protein Properties Length: 323aa    MW: 35754.6 Da    PI: 6.7098
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV52140.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.44.3e-4059119262
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                 +e+alkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  KZV52140.1  59 HEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 119
                 7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2757113IPR003851Zinc finger, Dof-type
PfamPF027011.7E-3361117IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05963117IPR003851Zinc finger, Dof-type
PROSITE patternPS01361065101IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGLTSLQVCM DSSDWLQQGA ISEENPGLDS SPITPPSDHE DIVACSRPLM ERRLIRPQHE  60
QALKCPRCES THTKFCYYNN YSLSQPRYFC KTCRRYWTKG GTLRNIPVGG GCRKNKKVSS  120
NPKKPSPNAD LQSSDLHVNG QQNYSGLSYN VSGQMNSSTE LQLAFPHDQI HFPSLLPNGL  180
YGSNFNIANP SFWIENPAQI DFMENKYESL LGRDDLMGGA NGNFHGIFSP FEAIPSVDHH  240
QHQSGISNPG NGTILESYHH QNLEVDMKPN TSSKNVFALE WHDNHHHQQA AACNSDAGIG  300
YLGGIGSSWT GLMNAYGSSN PLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV52140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071865.18e-85dof zinc finger protein DOF5.6 isoform X1
TrEMBLA0A2G9HDC81e-88A0A2G9HDC8_9LAMI; Uncharacterized protein
STRINGcassava4.1_012138m1e-81(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48952240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.16e-45Dof family protein