PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV51966.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HSF | ||||||||
Protein Properties | Length: 194aa MW: 22366.6 Da PI: 9.8433 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.8 | 3.4e-33 | 22 | 123 | 2 | 102 |
HHHHHHHHHCTG..........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 Flkklyeilede..........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++le+e ++++sw+++g+ fvv+ + ef++ vLp+yFkh+nf+SF+RQLn+YgFkk+ +++ weF+h++F++ KZV51966.1 22 FLSKTYDLLETEeeerrgccggGGDRIVSWNSEGDGFVVWSPAEFSEVVLPRYFKHNNFSSFIRQLNTYGFKKSASKR---------WEFQHEKFQR 109 9*********777778888888999************************************************99988.........********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g+k+ll++i rkk KZV51966.1 110 GSKHLLTEIGRKKC 123 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.0E-35 | 17 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.6E-41 | 18 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.18E-26 | 20 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-30 | 22 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MVTSHAPPRA GVTRKIKCPA PFLSKTYDLL ETEEEERRGC CGGGGDRIVS WNSEGDGFVV 60 WSPAEFSEVV LPRYFKHNNF SSFIRQLNTY GFKKSASKRW EFQHEKFQRG SKHLLTEIGR 120 KKCEASSAFP PFLKPNTYSD KRKYKSTNAP TIGVLMEENK TLIREKQQLQ LQIAYFKNLE 180 TELRRCLPLY TACN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-17 | 7 | 121 | 15 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-17 | 7 | 121 | 15 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-17 | 7 | 121 | 15 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV51966.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022886333.1 | 3e-77 | heat stress transcription factor B-2a-like isoform X1 | ||||
Swissprot | Q96320 | 2e-34 | HSFB1_ARATH; Heat stress transcription factor B-1 | ||||
TrEMBL | A0A2Z7D4A5 | 1e-143 | A0A2Z7D4A5_9LAMI; Heat stress transcription factor B-2a-like | ||||
STRING | Migut.H01491.1.p | 1e-75 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10707 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 4e-36 | heat shock factor 4 |