PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51409.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 726aa    MW: 79698.1 Da    PI: 6.1873
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51409.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-1958113156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  q+k+WFqN+R+++k
  KZV51409.1  58 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQIKFWFQNKRTQMK 113
                 688999***********************************************998 PP
2START2122.1e-662474671206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+ +ep+W        e +n++e++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d + qW+  +     +a+tle +s
  KZV51409.1 247 ELAVAAMEELFRMAQTGEPLWIPGTgnsaETLNEEEYMRTFPRGIGpkplgLKSEASRESTVVIMNHINLVEILMDAN-QWSSVFSsivsRAMTLEILS 344
                 57899****************98777788**************999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R+ +fvRy++ +++g w++vdvS+d+ ++ +    + R++++pSg+li++++ng+skvtwvehv++++r +h
  KZV51409.1 345 TGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKHHSDGIWAVVDVSLDNLRPTS----ISRCRRRPSGCLIQELPNGYSKVTWVEHVEVDDRAVH 439
                 *******************************************************976....8************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 ++++ lv+sgla+ga++wvatl+rqce+
  KZV51409.1 440 SIYKTLVNSGLAFGARRWVATLDRQCER 467
                 **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-1942115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-2143109IPR009057Homeodomain-like
PROSITE profilePS5007116.47155115IPR001356Homeobox domain
SMARTSM003893.4E-1856119IPR001356Homeobox domain
CDDcd000865.20E-1858116No hitNo description
PfamPF000465.1E-1758113IPR001356Homeobox domain
PROSITE profilePS5084845.627238470IPR002913START domain
SuperFamilySSF559612.43E-37240469No hitNo description
CDDcd088756.54E-130242466No hitNo description
SMARTSM002347.0E-66247467IPR002913START domain
PfamPF018525.0E-55248467IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-5349466IPR023393START-like domain
SuperFamilySSF559615.04E-26487718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MFQPNMFDSH HHLLDLGHKS PENELDLIRD DEYESKSGTD IMEAPSGDDQ DPNQRPKKKR  60
YHRHTQHQIQ EMESFFKECP HPDDKQRKEL GRRLGLEPLQ IKFWFQNKRT QMKAQHERHE  120
NTQLRSDNDK LRAENVRYKE ALSNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PMLTYPHLSP GASRSLDLGV GNFGSHASIS AGEIYGAADL LRSVSGPSDS  240
EKPMIIELAV AAMEELFRMA QTGEPLWIPG TGNSAETLNE EEYMRTFPRG IGPKPLGLKS  300
EASRESTVVI MNHINLVEIL MDANQWSSVF SSIVSRAMTL EILSTGVAGN YNGALQVMTA  360
EFQVPSPLVP TRENYFVRYC KHHSDGIWAV VDVSLDNLRP TSISRCRRRP SGCLIQELPN  420
GYSKVTWVEH VEVDDRAVHS IYKTLVNSGL AFGARRWVAT LDRQCERLAS VMANNITAGE  480
AGVISSPEGR KSMLKLAERM VISFCTGVGA STAHTWTTLS GSGADDVRVM TRKSIDDPGR  540
PPGIVLSAAT SFWLPVPPKR VFDFLRDENS RSEWDILSNG GLVQEMAHIA NGRDPGNSVS  600
LLRVNSSNSS QSNMLILQES CTDSTGSYVI YAPVDIVAMN VVLSGGDPDY VALLPSGFAI  660
LPNGPSNQAG EIPEVGSGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKGA  720
IMAESA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A2Z7D3J60.0A0A2Z7D3J6_9LAMI; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]