PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51225.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 247aa    MW: 28046.9 Da    PI: 5.9715
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51225.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-091812152155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++++  LA+++gL+++q+ +WF N+R ++
  KZV51225.1 181 KWPYPSEAQKLALAESTGLDQKQINNWFINQRKRH 215
                 569*****************************885 PP
2ELK41.82.2e-14135156122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK qLlrKYsgyLgsLkqEF+
  KZV51225.1 135 ELKGQLLRKYSGYLGSLKQEFM 156
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037901.8E-14134IPR005540KNOX1
SMARTSM012553.6E-9138IPR005540KNOX1
SMARTSM012561.2E-254394IPR005541KNOX2
PfamPF037914.2E-214792IPR005541KNOX2
PfamPF037893.7E-11135156IPR005539ELK domain
SMARTSM011882.8E-8135156IPR005539ELK domain
PROSITE profilePS5121311.174135155IPR005539ELK domain
PROSITE profilePS5007112.94155218IPR001356Homeobox domain
SuperFamilySSF466895.56E-20157229IPR009057Homeodomain-like
SMARTSM003892.6E-13157222IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-28160220IPR009057Homeodomain-like
CDDcd000863.83E-13167219No hitNo description
PfamPF059202.3E-17175214IPR008422Homeobox KN domain
PROSITE patternPS000270193216IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAHPYYHRLL AAYANCQKIG APPEVVAVLE EACASAAALG RQGTSCVGED PGLDQFMEAY  60
CEMLSKYEQE LSKPFKEAML FLSRIECQFK SLSLSPTDPG NSLAACGEAV DRNGSSEEDM  120
DVNTSTIDPL AEDHELKGQL LRKYSGYLGS LKQEFMKKRK KGKLPKEARQ QLLDWWSKHY  180
KWPYPSEAQK LALAESTGLD QKQINNWFIN QRKRHWKPSE DMQFVVMDAM HYMENVPFPS  240
DMSSSFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150159LKQEFMKKRK
2156160KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089410.11e-142homeobox protein knotted-1-like LET6 isoform X1
SwissprotP466081e-128HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A2Z7CXZ80.0A0A2Z7CXZ8_9LAMI; Uncharacterized protein
STRINGGorai.010G183800.11e-139(Gossypium raimondii)
STRINGVIT_10s0116g00190.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-111KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]