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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV51057.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | WRKY | ||||||||
Protein Properties | Length: 346aa MW: 38880.2 Da PI: 7.8285 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.9 | 5.1e-34 | 196 | 253 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp++v++tYeg+Hnh+ KZV51057.1 196 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCPVKKRVERSFQDPTIVVTTYEGQHNHH 253 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.0E-35 | 180 | 255 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-29 | 187 | 255 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.305 | 190 | 255 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-39 | 195 | 254 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-26 | 196 | 253 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MSEDLLRDEF YYHQTFHDDL RRNAGGATNF QYSNTTKNAT PPANNSTRAP NSFPADSSGH 60 QRQMLDPRWY LSSTLHGPDF DHNKLSAAGF GTSPLSSSAK EGLRALVVDN LQGLGEVETP 120 VTPNSSISAS STEVAPGEES DSKKNQKLDT DQAKEAAEEG ENMISSRDNK SKKKGEKKQK 180 EPRFAFMTKS EIDQLEDGYR WRKYGQKAVK NSPYPRSYYR CTTPKCPVKK RVERSFQDPT 240 IVVTTYEGQH NHHVPATLRG AAATGMFAPA GSILMTTPPF LQEQQRLLQM PYQLYMNNFS 300 GRNLVYDHHQ EQQLSLSTLI QDHDLHVSGH GLLQDIIPPA FPKREF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-31 | 185 | 256 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-31 | 185 | 256 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV51057.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022879638.1 | 3e-93 | probable WRKY transcription factor 71 | ||||
TrEMBL | A0A2Z7CYH6 | 0.0 | A0A2Z7CYH6_9LAMI; WRKY transcription factor | ||||
STRING | XP_002519733.1 | 8e-70 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 2e-52 | WRKY DNA-binding protein 71 |