PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51032.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 890aa    MW: 98558.1 Da    PI: 6.7745
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51032.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23113214199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d+++++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  KZV51032.1 113 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHNNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI--WNEKNQLL 208
                 99*****************************9777666.49************************************************..8899999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  KZV51032.1 209 LGIRRA 214
                 ***997 PP
2Auxin_resp119.33.1e-39239322183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rWpnS+Wrs+k
  KZV51032.1 239 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPARWPNSHWRSVK 322
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-4897242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-40106228IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-21112213No hitNo description
PROSITE profilePS5086312.449113215IPR003340B3 DNA binding domain
SMARTSM010191.7E-23113215IPR003340B3 DNA binding domain
PfamPF023624.7E-22113214IPR003340B3 DNA binding domain
PfamPF065071.8E-34239322IPR010525Auxin response factor
PfamPF023095.7E-7752844IPR033389AUX/IAA domain
SuperFamilySSF542772.75E-6753830No hitNo description
PROSITE profilePS5174523.609755839IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
DKNCLNSELW HACAGPLVSL PAIGSHVVYF PQGHSEQVAV STNKEVDAQI PNYPSLTPQL  60
ICQLHNVTMH ADLETDEVYA QMTLQPLSPQ EQKEISFLPA DLGTPSKQPT NYFCKTLTAS  120
DTSTHGGFSV PRRAAEKVFP PLDFSLQPPA QELIARDLHN NEWKFRHIFR GQPKRHLLTT  180
GWSVFVSAKR LIAGDSVLFI WNEKNQLLLG IRRATRPQTV MPSSVLSSDS MHLGLLAAAA  240
HAAATNSRFT IFYNPRASPS EFVIPLAKYV KAVYHTRVSV GMRFRMLFET EESSVRRYMG  300
TITGIGDLDP ARWPNSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM YPSPFSLRLK  360
RPWPPGLPSF TGMKLDEMGL NSNLMWLRGE VGDRGVQSIN FQGMGISPWM QQRLDTSMVG  420
IQNDVYQAMA AAALQEMRTV DPSRQQILSP SLQFQQTPAA ANNRLCTLVQ PQVLLQSQPT  480
APTQYIQSLQ GSHTQAHQPH ANLQQQFHHQ NSFNDLHAQH RHQTPLPQQQ HMVDHQQVTN  540
VASPILSQLS PNPQVQSPTM QSMSSMRQNY SDSNIKPVAS DVNSPLHNLL GSVTQDEASN  600
FLNMHRPNNL LSSNGWPAKR VALDPLLSGS VSPGVSHQTG NLGPPYQNVS QNPVSLPPFP  660
GRECLLEQEG SNDPQNHFLF GVNIDSSLLI QNGMSNLRGV GSDSDNTAMA YASSSYISSS  720
GADYSLNPIV TSSQCVNESG FLQSDILAHA NPPDRAFVKV YKAGSFGRSL DISKFSSYHE  780
LRSELAQMFG LGGQLEDPLR SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW CIKILSPQEV  840
QEMGKRGLEL LNSVPTQRSP LQNGTCDGYV GQQEARNMGS GLPSVATLDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-159234348388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096635.10.0auxin response factor 6 isoform X1
RefseqXP_011096636.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2Z7CVD60.0A0A2Z7CVD6_9LAMI; Auxin response factor (Fragment)
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]