PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

HD-ZIP

Protein Properties

Length: 205aa MW: 23663.6 Da PI: 5.4527

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV50878.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65	1.1e-20	16	69	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k ++f++eq+++Le++Fe+++++ ++e+LAk+lgL+ rq+ +WFqN+Ra++k KZV50878.1 16 KERRFNDEQIRTLEAVFESESKLEPGKKEKLAKQLGLQPRQIAIWFQNKRARWK 69 6679*************************************************9 PP
2	HD-ZIP_I/II	109.3	2.7e-35	16	107	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k rr+++eq+++LE Fe+e+kLep +K++la++Lglqprq+a+WFqn+RAR+k+k +Ekd+ L + y++l+++ e+L+ke++ L +l++ KZV50878.1 16 KERRFNDEQIRTLEAVFESESKLEPGKKEKLAKQLGLQPRQIAIWFQNKRARWKSKTVEKDHGLLLADYKNLSSQFESLKKENQCLLFQLRK 107 89**********************************************************************************99988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.216	11	71	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-18	14	78	IPR009057	Homeodomain-like
SMART	SM00389	2.5E-18	14	75	IPR001356	Homeobox domain
CDD	cd00086	1.46E-15	16	71	No hit	No description
Pfam	PF00046	5.6E-18	16	69	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-20	18	76	IPR009057	Homeodomain-like
PRINTS	PR00031	6.6E-6	42	51	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.6E-6	51	67	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.9E-9	73	111	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MINLEPSNHK KQKSSKERRF NDEQIRTLEA VFESESKLEP GKKEKLAKQL GLQPRQIAIW 60 FQNKRARWKS KTVEKDHGLL LADYKNLSSQ FESLKKENQC LLFQLRKLKN ETAPMNTRNV 120 DSLVKDIPSK YMEGIVSNDE HSSSVEKVVP LGFEEEESYQ FLNSATAEVL DVSSTSSPLE 180 DFGSLESDDM INQVTASTDQ WWFWS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV50878.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093009.1	4e-51	homeobox-leucine zipper protein ATHB-12
Swissprot	P46897	1e-37	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A2Z7CVX3	1e-148	A0A2Z7CVX3_9LAMI; Homeobox-leucine zipper protein ATHB-12
STRING	Solyc01g096320.2.1	4e-47	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	4e-40	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]