PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV50481.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 452aa    MW: 51300.4 Da    PI: 6.7366
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV50481.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.3e-07394450148
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                      r+ W ++E+e l+++v+++ +       W++I +       ++Rt+ ++k++w+++l
       KZV50481.1 394 RLMWRKDEEEMLKEGVQKFATTakqnlPWRKILEFGRhvfdETRTPVDLKDKWRNLL 450
                      678******************************9998******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-73490IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.2E-73692IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS0135903982IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.666389450IPR017877Myb-like domain
SuperFamilySSF466895.11E-9392451IPR009057Homeodomain-like
SMARTSM007173.0E-4393452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-8393450IPR009057Homeodomain-like
PfamPF002491.3E-5396450IPR001005SANT/Myb domain
CDDcd116602.69E-11396450No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MLVDALDKCR GASLLTLRIE DSRMGDGLWK MGWSEINLCI KCDEGQNLLV CSENDCLLAV  60
HENCMGCPAR FDDAGNFYCP HCFHRQAVRE SRRAWENAMS KKKALSIFEM MEEEKIAEAK  120
DPNQSKGDED TDMAAFHARK NVHGTDAPHQ SVETDKGTLG SIHGEGTANF SPTRGANESR  180
IAYKIDTTKR TENINGIMRD MEPIVAHAEA DETSQQDRML DRMENEERVD CHKLNKIIGN  240
NEKDAFREDP AQVQEPSVPS RRQLDNINMY EEHKINIVEE ESVQEEVSQS SRGTSGDELA  300
LTAQAGSKGR SKLNDSSDGD FETVSESGKR PKPSNKNKNV RKSQRKNPPR RLSSALRNNK  360
EFDEQVGTSR RSNQSLTLSV KPATDLFVGG KRKRLMWRKD EEEMLKEGVQ KFATTAKQNL  420
PWRKILEFGR HVFDETRTPV DLKDKWRNLL AR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV50481.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7CTU10.0A0A2Z7CTU1_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-07MYB_related family protein