PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV50275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 37615.2 Da PI: 6.121 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.5e-08 | 190 | 237 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + + k a++L + +++++ Lq KZV50275.1 190 SHSLAERARREKINARMKLLQELVPGC---N-KVSWTAMVLDEIINHVQALQ 237 8*************************9...4.33556999999999999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-14 | 184 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.49E-9 | 184 | 241 | No hit | No description |
PROSITE profile | PS50888 | 13.929 | 186 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-15 | 187 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-6 | 190 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-8 | 192 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MEPPVEETRV QFRSGIRGSN PEEMSFGFLP AHEVVSTQTP SENGGSSFTA LLELPPPQAV 60 ELLVNEDFRA RTAPPIFPSN TVLVDRASKF SVFATAVNSP EVKSVLSASC SMKPDMVKLE 120 PMDSDSHLNS SMPAASDQSP KSLKRKEKEK KVNETNKKSK KVVPNDISEG SGDKLPYIHV 180 RARRGEATDS HSLAERARRE KINARMKLLQ ELVPGCNKVS WTAMVLDEII NHVQALQRQV 240 EFLSMRLAAV NPRNNINLDA FFAEESEPAV DNYHSMFTAS MWPERQVSGS RQQYQQLWHL 300 EGHQQPIWAR EEDNSNFITT ENSLLTFDSS SNSGAMS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV50275.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078863.1 | 1e-154 | transcription factor bHLH48 | ||||
Swissprot | Q8VZ02 | 6e-72 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A2Z7CV95 | 0.0 | A0A2Z7CV95_9LAMI; Uncharacterized protein | ||||
STRING | Migut.K00063.1.p | 1e-131 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4029 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57800.2 | 2e-72 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|