PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV50187.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ZF-HD
Protein Properties Length: 330aa    MW: 36064.1 Da    PI: 7.7944
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV50187.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.76.6e-3453109358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+YkeClkNhAa+lGghavDGCgEfmps++++ ++++++kCaACgCHRnFHRr++e
   KZV50187.1  53 VVTYKECLKNHAAALGGHAVDGCGEFMPSSNSSsSDPTSFKCAACGCHRNFHRRDPE 109
                  589**************************9988899******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.5E-2854108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.7E-3055107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1956107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.62956107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.62E-17192263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28194263IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-24202259IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDLSNSTVKT PEAETETPTR IPPAKLSPFS NGLLKRHAPL QLHHHHHLQH PVVVTYKECL  60
KNHAAALGGH AVDGCGEFMP SSNSSSSDPT SFKCAACGCH RNFHRRDPEE PPLLPPPNAV  120
PALEFHPHHR HHPPHELPRA NSGDSPNNSP SPPPISSSYY PSAPHMLLAL SHGLATVPDS  180
SITHIPAAIN PTSTPVSNSG SRKRFRTRFT QDQKDKMLEL ADRLGWRMQK KDEDLINEFC  240
AQIGVDKGVF KVWMHNNKNT SGKNKDHQLT LSNNSTAMSS PPAAATSNGV NYSDFSSPAA  300
AALYHQQENN NNGSKQDVGG QEINQLHLQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-212012601675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV50187.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085755.11e-116zinc-finger homeodomain protein 9
SwissprotQ9LHF04e-72ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A2Z7CW110.0A0A2Z7CW11_9LAMI; Uncharacterized protein
STRINGevm.model.supercontig_140.552e-93(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-65homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]