![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV50187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 330aa MW: 36064.1 Da PI: 7.7944 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.7 | 6.6e-34 | 53 | 109 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v+YkeClkNhAa+lGghavDGCgEfmps++++ ++++++kCaACgCHRnFHRr++e KZV50187.1 53 VVTYKECLKNHAAALGGHAVDGCGEFMPSSNSSsSDPTSFKCAACGCHRNFHRRDPE 109 589**************************9988899******************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.5E-28 | 54 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.7E-30 | 55 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-19 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.629 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 7.62E-17 | 192 | 263 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-28 | 194 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-24 | 202 | 259 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MDLSNSTVKT PEAETETPTR IPPAKLSPFS NGLLKRHAPL QLHHHHHLQH PVVVTYKECL 60 KNHAAALGGH AVDGCGEFMP SSNSSSSDPT SFKCAACGCH RNFHRRDPEE PPLLPPPNAV 120 PALEFHPHHR HHPPHELPRA NSGDSPNNSP SPPPISSSYY PSAPHMLLAL SHGLATVPDS 180 SITHIPAAIN PTSTPVSNSG SRKRFRTRFT QDQKDKMLEL ADRLGWRMQK KDEDLINEFC 240 AQIGVDKGVF KVWMHNNKNT SGKNKDHQLT LSNNSTAMSS PPAAATSNGV NYSDFSSPAA 300 AALYHQQENN NNGSKQDVGG QEINQLHLQD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-21 | 201 | 260 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV50187.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085755.1 | 1e-116 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LHF0 | 4e-72 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A2Z7CW11 | 0.0 | A0A2Z7CW11_9LAMI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_140.55 | 2e-93 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28920.1 | 1e-65 | homeobox protein 34 |
Publications ? help Back to Top | |||
---|---|---|---|
|