PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

KZV49975.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 210aa MW: 23369.6 Da PI: 8.8462

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV49975.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.9	1.8e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l++++e++r d+++sl++eA+ r+ +Pv+Ga+g+ ++++++l+q+++e+ KZV49975.1 2 SCNGCRILRKGCKENCILRQSLqgiqsPQAQANATVFVAKFFGRAGLMSFLSSVHESQRADLFQSLLFEACGRTVNPVNGALGLQWTGNWHLCQAAVET 100 6***********************************************************************************************998 PP DUF260 95 all 97 +l+ KZV49975.1 101 VLR 103 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.343	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSCNGCRILR KGCKENCILR QSLQGIQSPQ AQANATVFVA KFFGRAGLMS FLSSVHESQR 60 ADLFQSLLFE ACGRTVNPVN GALGLQWTGN WHLCQAAVET VLRGGVLRAL PEFEEGFAGN 120 EYDMYGFEEM NLRLKRRGLD VNETTSGLNL GFTSGFPARM TAGGRVNRRR GKRPVTPSEE 180 SEKTTFESGF VMPQNDNYDG HQTKLLRLFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV49975.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092710.1	1e-98	LOB domain-containing protein 37-like
Swissprot	Q9FN11	4e-61	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2Z7CUF3	1e-154	A0A2Z7CUF3_9LAMI; LOB domain-containing protein 37-like
STRING	XP_009625187.1	2e-93	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-63	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]