PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV49755.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23549.5 Da    PI: 8.2404
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV49755.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.32.6e-25958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+ien++nrqvtfskRr g++KKA+E+ vLCd++ a+i+fss+g+l  +s
  KZV49755.1  9 KKIENTTNRQVTFSKRRYGLIKKAYEIAVLCDIDLALIMFSSSGRLSHFS 58
                68********************************************9997 PP
2K-box14.21.8e-06831441273
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                 ++ e+ q+e+  L++++e+ ++++R +  e+ +  s+ e q+ e +L ++l+++ ++K+ ll
  KZV49755.1  83 HNKEEIQKEIHDLRNQLESAEEQLRIFEPESEKFASMAEFQSCEVRLVEALRRVTQRKSFLL 144
                 57899*****************************************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.413161IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-33160IPR002100Transcription factor, MADS-box
CDDcd002652.33E-32278No hitNo description
SuperFamilySSF554555.89E-28289IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.9E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-243859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-583145IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGRSKLPIKK IENTTNRQVT FSKRRYGLIK KAYEIAVLCD IDLALIMFSS SGRLSHFSGR  60
KRIEDVIFRY LNLSDRDRGG TIHNKEEIQK EIHDLRNQLE SAEEQLRIFE PESEKFASMA  120
EFQSCEVRLV EALRRVTQRK SFLLSSFGVQ SSYHDTIQEI NTVVQYITEA QAQGGLDSHY  180
HEQGNGISQL NNINAGSDAS SVHLRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-17175174MEF2 CHIMERA
6byy_B1e-17175174MEF2 CHIMERA
6byy_C1e-17175174MEF2 CHIMERA
6byy_D1e-17175174MEF2 CHIMERA
6bz1_A1e-17175174MEF2 CHIMERA
6bz1_B1e-17175174MEF2 CHIMERA
6bz1_C1e-17175174MEF2 CHIMERA
6bz1_D1e-17175174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV49755.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097601.11e-99agamous-like MADS-box protein AGL66
SwissprotQ1PFC28e-48AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A2Z7CTQ11e-149A0A2Z7CTQ1_9LAMI; Uncharacterized protein
STRINGORGLA08G0167200.18e-62(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.13e-50AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]