PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV49022.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 386aa    MW: 42499.8 Da    PI: 7.478
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV49022.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.6e-12326125
                --S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                +++elCr+f+r G C+yG+rCkF H
  KZV49022.1  3 PRRELCRNFQR-GSCQYGERCKFLH 26
                689********.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.962229IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6328IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6430IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-8628IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MPPRRELCRN FQRGSCQYGE RCKFLHATSQ QSKSNPFGFG VQQQMSNPVS FSFQNDHTGG  60
RNDSGSKPNH FKPFENKWTR DSSGNASGAT VSRQSNGQPQ AANHKCNDPE SCKRIMVEDF  120
ENEMPQWKLT CYGHCRNGPC DIVGDISCEE LRGLAYDDAN RGLSLHSIID REKSLVNTKL  180
VEFQNLVHKP YMVSSDATPS TQRKFAGTSA DALSNSRSVS HSVSSFSQLN ASLNTRSAGT  240
PNYAFGQVST LQNTSQQFSM LQASTMPLNS SGTSMTTNQL PHQPVQSSFS FGSATPSNGV  300
MNPNWNPFST SSKSSQMANV ANSNMKSVSN VPNISLNDIG QSSISVHDNL LKENTDVDLS  360
IWNKTEWKWN AGEIPEDEPP SSCIYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV49022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078165.11e-143zinc finger CCCH domain-containing protein 46 isoform X2
TrEMBLA0A2Z7CPK30.0A0A2Z7CPK3_9LAMI; Zinc finger CCCH domain-containing protein 16
STRINGGorai.012G009900.11e-102(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-67C3H family protein