PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV48640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 250aa MW: 27481.3 Da PI: 7.4587 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.5 | 5.5e-21 | 24 | 71 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien snrqvtfskRr g++KKA+E+++L +aeva+i+ s +++ KZV48640.1 24 KKIENLSNRQVTFSKRRVGLFKKASEICILSGAEVAIIVHSLGKRVFA 71 68*************************************997766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.5E-29 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.348 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-24 | 17 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.06E-33 | 17 | 87 | No hit | No description |
PRINTS | PR00404 | 2.2E-18 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-19 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-18 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-18 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MLKNTSNIPF KKKTTQGRKK IEIKKIENLS NRQVTFSKRR VGLFKKASEI CILSGAEVAI 60 IVHSLGKRVF AFGHPSTDAV IERFLKDVAE PGSGGEARDN CASTAKVRDF NKHYLDMCKE 120 LEMEKKRKEM IEAEKRAVEG CGYTVGGGGY WWDEPVDSMD VEDLEQYMTA LGELINNVTM 180 RASDLMHAQS SNSLSPLPPQ SLPLPITTFG GLSNLDAEGC PTFGDTAAIL NQYPANGGFH 240 YGNTGWGAIQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV48640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835329.1 | 6e-79 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2Z7CNH5 | 0.0 | A0A2Z7CNH5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N01120.1.p | 2e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-32 | AGAMOUS-like 62 |