PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48527.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 329aa    MW: 37152.7 Da    PI: 5.1424
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48527.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.11.4e-33201122103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d++++e+i w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll +i 
    KZV48527.1  20 FVMKTYQMVNDATTNEVIAWGNGSNSFIVVEPLSFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGRTQLLINIV 107
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    KZV48527.1 108 RRKHN 112
                   *9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.6E-4616109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-3117109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.7E-3518109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-2820109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-172043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-175870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-177183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MHGMEGGDGY SYGNGVIAPF VMKTYQMVND ATTNEVIAWG NGSNSFIVVE PLSFSQRILP  60
VYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEWFLRGRT QLLINIVRRK HNSRNFVSHY  120
KNEDGEEEEI ELEIRKLKQE QKRLEQELQS MNRRLEATEK RPQQMMTFLN KVVEDPGILP  180
RIMLEREEKL KQITSGNNEK KRKALISAPS LNSLPEMAMP SSSTSSEEDH EGNGIKGSAQ  240
ISSYSDCFEM PCPEGSNNHL PIISQEHHSA TFPGLLTGDS VAVSPLLSND FGYSFGDGVL  300
MGYLEELASD ENVSVTPPYP FSLFGGGFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2141098129Heat shock factor protein 1
5d5v_B2e-2141098129Heat shock factor protein 1
5d5v_D2e-2141098129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48527.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078395.11e-104heat stress transcription factor C-1-like
SwissprotQ9LV523e-80HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2Z7CRE70.0A0A2Z7CRE7_9LAMI; Uncharacterized protein
STRINGcassava4.1_010201m8e-95(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-70heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]