PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV47992.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

MYB_related

Protein Properties

Length: 294aa MW: 32334.3 Da PI: 9.7541

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV47992.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.4e-14	80	126	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky KZV47992.1 80 RVAWSEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 126 679*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.817	75	131	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-16	76	132	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-10	79	129	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.3E-16	79	129	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.5E-11	80	126	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-11	80	126	IPR001005	SANT/Myb domain
CDD	cd00167	6.47E-9	82	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MASQTVGNEE QNSRTCSEVS GGGGGKGFML FGVRVVEGSF RKSASTNNLA QYEQALDSNT 60 NDVAAAGYVS DDVVHRSRHR VAWSEEEHKL FLLGLQKVGK GDWRGISRNF VKTRTPTQVA 120 SHAQKYFLRR NNHNRRRRRS SLFDITTEAV LSPTTEDQIQ LETPPILPQE NETKNLEKFQ 180 FSPSFPFSIK PNLIEPIEKD PTENLSLLQL NNSPRPLMPI PILPLPPSSK MSKLDLHKAT 240 PVDRPSLSLN LSTPAPSNQQ SPAQPPQSGR HVVAFEAVPA SFNGSGGDSI ISVA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00630	PBM	Transfer from PK17526.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV47992.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086441.1	2e-95	transcription factor MYB1R1
Swissprot	Q9LVS0	2e-44	KUA1_ARATH; Transcription factor KUA1
TrEMBL	A0A2Z7CLN8	0.0	A0A2Z7CLN8_9LAMI; Uncharacterized protein
STRING	Migut.L01371.1.p	3e-84	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11423	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	3e-51	MYB_related family protein

Publications ? help Back to Top
Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]