PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47568.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family G2-like
Protein Properties Length: 300aa    MW: 32534.5 Da    PI: 7.1651
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47568.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-3095148155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  KZV47568.1  95 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 148
                 59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-2092152IPR009057Homeodomain-like
PROSITE profilePS5129411.05992151IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-3094153IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2496148IPR006447Myb domain, plants
PfamPF002491.1E-798147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MREEESNWFS KWEDELPSPE ELMPLNQSLI TPDLALAFNI SNPHQNLHSH HTPPPPPPQS  60
TAHSSAEFDS PELSGAAGGS GGAAGSDEPA RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA  120
VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGISNGG NVGSIGNNSP AGLSGSGMDP  180
AMDHLFASSP VPAQFLNPGR GNPEHFLPFV PVAAAAMQHH HPMAVVAAGP GHQQQLQKQF  240
RPFGHSPPNR QFDHPFSRQS QHQVQRMGGS VVPLAYVEDM EPAGTTNGRK VLTLFPTGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-3295151157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47568.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022872101.11e-138transcription factor MYBC1-like
SwissprotO222104e-56MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A2Z7CKV30.0A0A2Z7CKV3_9LAMI; Transcription factor LUX-like
STRINGXP_009790047.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.13e-67G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]