PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47266.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 710aa    MW: 76939.1 Da    PI: 6.1427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47266.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07285305526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  KZV47266.1 285 PCPDFRK-GACRRGDMCEYAHG 305
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.82E-1718138IPR020683Ankyrin repeat-containing domain
PfamPF127966.9E-1155129IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.3E-1858140IPR020683Ankyrin repeat-containing domain
SMARTSM002480.236090IPR002110Ankyrin repeat
PROSITE profilePS5029715.45960136IPR020683Ankyrin repeat-containing domain
PRINTSPR014157.9E-66176IPR002110Ankyrin repeat
CDDcd002041.94E-1462138No hitNo description
PROSITE profilePS5008811.80895130IPR002110Ankyrin repeat
SMARTSM002482.1E-495127IPR002110Ankyrin repeat
PRINTSPR014157.9E-6114128IPR002110Ankyrin repeat
SMARTSM003564.0E-6280306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582285307IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5285305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4285307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4313343IPR000571Zinc finger, CCCH-type
SMARTSM0035664315338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MKDISNLSVE TEDSFSSVLE FAANNDLESF KRYIEFDLSA VDETGPWFVR KRGSKQISEE  60
ERTPLMVAAT YGSVDVLKLI VALPEVDLNK SCGEDKWTAL HCAAYGGSSH AFDVVKLLLS  120
AGADPNVEDI DGRRPVDVIV APPKLPGARA ALEELLLNNI SDGSVGEGNN GGSVCSSNAS  180
SPILSSNQES ISPSSPSNYI SIPSTLKSSD VTVNPVSEKK QYPVDPSLPD IRNSIYSTDE  240
FRMFSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH YSCVPCPDFR KGACRRGDMC  300
EYAHGVFECW LHPAQYRTRL CKDGTSCARQ VCFFAHTQEE LRPLYGSTGS GVPSPISAAS  360
AASFMDMATA LSLLPGSPSS HSVMSPVFNP SMSPTANGMS HSSAPWPQPN VPSLNLPGSN  420
MQSSRLRSSL SARDIPPHDL SLLQDFDAQQ LVMNDLACFS QPHPNSALLN RSARSKSSLT  480
PSNLEDLFMA ELALSPRFSS DQAAASSVFS PTHKSAVLNQ FQQQQNILSP INTKAFSPRN  540
IEHPLLQASI GVSSPRMSPR SLESASPMSA RISAFAHREK QQLQMRSLSS RDLCSNRLPT  600
TLGSPGAALS KWGSPNEKAD WSVGGNNHVS LKRSSSFEVG NDGEEPDLSW VQSLVKESPP  660
EMIEKPVAAS NSGSAGTSGE CLKSKSEIDS IDHSVIGAWL EQIQHDQLVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087691.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2Z7CR160.0A0A2Z7CR16_9LAMI; Zinc finger CCCH domain-containing protein 30-like
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-170CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]