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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
KZV46491.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 207aa MW: 23883.5 Da PI: 11.2371 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KZV46491.1 | genome | CNU | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 94.9 | 3.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien +nrqvtfskRrng+lKKA+ELS+LCdaeva++ifs++gk+ye+ss
KZV46491.1 9 KRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSPSGKVYEFSS 59
79***********************************************96 PP
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| 2 | K-box | 65.5 | 1.9e-22 | 77 | 162 | 5 | 90 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90
+++++ +++e +++e++ L++ + +L+ +h+ Ge+L+ L +k+L+qLe+qL +++++RskK +++ e+i++l+++ + +e+
KZV46491.1 77 QTNDQGFTNMEVWKNEIDDLRRTVASLEARDKHIAGENLSGLGMKDLKQLERQLRIGVERVRSKKRRIVAEHISYLKRRRSSGREQ 162
5566777899*******************9************************************************98877665 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.095 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 5.7E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.32E-33 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.53E-39 | 2 | 70 | No hit | No description |
| PRINTS | PR00404 | 2.7E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.8E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.7E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.7E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.7E-19 | 85 | 162 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 10.752 | 86 | 169 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 207 aa
Download sequence Send
to blast |
MGRGKVELKR IENPTNRQVT FSKRRNGLLK KAFELSILCD AEVALLIFSP SGKVYEFSSH 60
DIHRTIARYK SEVGITQTND QGFTNMEVWK NEIDDLRRTV ASLEARDKHI AGENLSGLGM 120
KDLKQLERQL RIGVERVRSK KRRIVAEHIS YLKRRRSSGR EQSSPKESGH PQLSRMSFKK 180
ETQAQAFITK QMRLEHAKGL NRRIRPG
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 140 | 155 | KRRIVAEHISYLKRRR |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}. |
| Publications
? help Back to Top |
- Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751] - Malabarba J, et al.
The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
J. Exp. Bot., 2017. 68(7): p. 1493-1506
[PMID:28369525] - Royo C, et al.
The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
Plant Physiol., 2018. 177(3): p. 1234-1253
[PMID:29853599]
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