PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46390.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 859aa    MW: 95172.5 Da    PI: 6.98
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46390.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26051.33.4e-161663095
      DUF260 30 fanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
                f++vhk+FG+snv+k++++l ee+r++a++slv+eA +r++dPv G +g ++++ ++l+  k++  
  KZV46390.1  1 FQAVHKVFGVSNVTKIVRNLGEEDRKIAVDSLVWEALCRQKDPVLGPYGDYRRVCEELRLYKNQFR 66
                89*****************************************************99999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.631175IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-14166IPR004883Lateral organ boundaries, LOB
SuperFamilySSF525408.63E-55233442IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.8E-60234440IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5172251.537235433IPR000795Transcription factor, GTP-binding domain
PfamPF000091.2E-51236430No hitNo description
TIGRFAMsTIGR013942.0E-250237851IPR006298GTP-binding protein TypA
CDDcd018912.00E-102237432No hitNo description
TIGRFAMsTIGR002312.5E-19238375IPR005225Small GTP-binding protein domain
PRINTSPR003153.7E-14239252IPR000795Transcription factor, GTP-binding domain
PROSITE patternPS003010272287IPR031157Tr-type G domain, conserved site
PRINTSPR003153.7E-14279287IPR000795Transcription factor, GTP-binding domain
PRINTSPR003153.7E-14299309IPR000795Transcription factor, GTP-binding domain
PRINTSPR003153.7E-14315326IPR000795Transcription factor, GTP-binding domain
PRINTSPR003153.7E-14351360IPR000795Transcription factor, GTP-binding domain
SuperFamilySSF504472.5E-26383537IPR009000Translation protein, beta-barrel domain
CDDcd036911.74E-29440529No hitNo description
Gene3DG3DSA:2.40.30.102.8E-19441541No hitNo description
PfamPF031441.3E-7454527IPR004161Translation elongation factor EFTu-like, domain 2
SuperFamilySSF549802.81E-9542625IPR009022Elongation factor G, III-V domain
Gene3DG3DSA:3.30.70.8705.4E-31542638No hitNo description
PfamPF006792.2E-9634687IPR000640Translation elongation factor EFG, V domain
CDDcd037105.65E-30636730No hitNo description
SuperFamilySSF549806.23E-17636766IPR009022Elongation factor G, III-V domain
Gene3DG3DSA:3.30.70.2403.5E-19639730IPR000640Translation elongation factor EFG, V domain
Gene3DG3DSA:2.40.50.2508.7E-35737830No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
FQAVHKVFGV SNVTKIVRNL GEEDRKIAVD SLVWEALCRQ KDPVLGPYGD YRRVCEELRL  60
YKNQFRQLSI TQGSLVYKPT QRMITSWNDN RVVNTNNDNN NNNNFNDNIV DNSFMNNIHI  120
NGNPVMDFYP FGYNDSAHNI QDSNKLVRPE RQNDSSLMLP QQYLPNAFNQ QYFLTGPLLR  180
SLLSSTSRKS CSNNFQPHGV SRAFDFIRPF SQATASASVA SSPREAAGSG VLDPSRLRNV  240
AVIAHVDHGK TTLMDRLLRQ CGADVPHERA MDSITLERER GITIASKVTS ISWKENELNM  300
VDTPGHADFG GEVERVVGMV EGAVLVVDAG EGPLAQTKFV LAKALKYGLR PILLLNKVDR  360
PSVTEERCDE VESLVFDLFA NLGATETQLE FPVLYASAKE GWASSTYTKC PTDDSKNMSD  420
LLDAIITHVP PPCANLDAPF QMLVSMMERD NYVGRILTGR ISSGILHVGD KVHGLHKTDS  480
GISEIEEGKV VKLMKKKGTS LISIDSAGAG DIVSMAGLNR PAIGHTIADV EVMTALPNVE  540
LDPPTISMTF GVNDSPLAGR DGTFLTGRQI GDRLKAEAER NLAINVLPGM SDSYEVQGRG  600
ELQLGILIEN MRREKFELSV SPPKVMYKME NGQKLEPIEE VTIEVNEEHV GLVMEALSHR  660
RGEITDMGPV RGHVGRTRIC LTCPSRHALL DNSYRIFVCL GLVGYRTVFN SDTRGTGFMH  720
RAFLTYEKHR GLLGNVRKGV LVSMGYGTIT AHALMGLEAR GMLFVKPGME TYDGMIIGEH  780
SRDTDLDVNP VRAKELTNIR AASKDENVKL TPPRLITLEE AIGYVASDEL IEVTPSAIRL  840
RKKYLDVNKR KAMSKRPKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a9v_A0.02368594606GTP-BINDING PROTEIN
5a9v_B0.02368594606GTP-BINDING PROTEIN
5a9v_C0.02368594606GTP-BINDING PROTEIN
5a9v_D0.02368594606GTP-BINDING PROTEIN
5a9v_E0.02368594606GTP-BINDING PROTEIN
5a9v_F0.02368594606GTP-BINDING PROTEIN
5a9w_A0.02368594606GTP-BINDING PROTEIN
5a9x_A0.02368594606GTP-BINDING PROTEIN
5a9y_A0.02368594606GTP-BINDING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1848857KRKAMSKRPK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098041.10.0uncharacterized protein LOC105176820 isoform X2
TrEMBLA0A2Z7CHA80.0A0A2Z7CHA8_9LAMI; Uncharacterized protein (Fragment)
STRINGEOX941660.0(Theobroma cacao)
STRINGMigut.H02161.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.19e-27LOB domain-containing protein 2