PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 327aa MW: 36880.2 Da PI: 7.3278

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV46288.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.1e-05	170	189	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ KZV46288.1 170 FSCPVCYKTFNRYNNMQMHM 189 89*****************9 PP
2	zf-C2H2	15.3	5.8e-05	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ KZV46288.1 254 FMCRKCGKTFAVRGDWRTHEKNC 276 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.68E-5	166	192	No hit	No description
PROSITE profile	PS50157	9.743	170	197	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.6E-6	170	189	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.45	170	192	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.0E-4	170	189	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	172	192	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.55E-6	236	274	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-5	250	274	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.725	254	274	IPR007087	Zinc finger, C2H2
SMART	SM00355	35	254	274	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MTDPHSNLYP QSFKSNFFHH FAVPTPPDHN NAYLENNLSI SHQCYNQAPN SPPLKEALPL 60 LRLTPTSCEE QKPSCARRDD FDEDKRAENG KKRTLFAADE EEEEDGGGVT VALHIGLPNP 120 SASDLATVVS GNPADKDGEA DVSGYQISSI NKGQYWIPTP SQILIGPTQF SCPVCYKTFN 180 RYNNMQMHMW GHGSQYRRGP ESLRGTQPTG MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT 240 LQTHYKRKHG IKPFMCRKCG KTFAVRGDWR THEKNCGKLW YCLCGSDFKH KRSLKDHIRA 300 FGNGHGAYGV DGFEEEEPAS EIEQDDD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV46288.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075201.1	1e-167	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-138	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2Z7CH79	0.0	A0A2Z7CH79_9LAMI; Uncharacterized protein
STRING	VIT_08s0007g08070.t01	1e-163	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-140	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]