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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV46175.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 246aa MW: 27811.5 Da PI: 4.9747 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.7 | 1.7e-14 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +n+ r+ +f kR +g++KK eELS+LC+++++ i +s+ KZV46175.1 11 LNNQAERKASFKKRCKGLMKKVEELSTLCGVDACAITYSE 50 6899**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.054 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.01E-22 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-20 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-14 | 12 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MARKKVTLAF LNNQAERKAS FKKRCKGLMK KVEELSTLCG VDACAITYSE FQPQPEVWPS 60 PPEARRVLER FLDQPDMDRT RFMDNQMSFT RQRIEKTTNK LRRLQRENKR KELTIFMFQC 120 IEGTADIRNF DIRDKGEMNV VIEDVLREIT GRMERLNASG EGPSTAMAMG EEPKAAHGEG 180 SSAAAAVGTQ EVAAQPGLME ESENQSGYSY WMNMLMSPID DFEWNTFAPG DLPDRNPDAP 240 SAPGTD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV46175.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088788.1 | 3e-56 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2Z7CHM8 | 0.0 | A0A2Z7CHM8_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0005s00420.1 | 1e-49 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1532 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 9e-41 | AGAMOUS-like 80 |