PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45655.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 430aa    MW: 48524.8 Da    PI: 9.514
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45655.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
       KZV45655.1 14 RGPWTPEEDAKILAYVASHGIGNWTSVPQKAGLNRCGKSCRLRWTNYL 61
                     89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-25664IPR009057Homeodomain-like
PROSITE profilePS5129426.427965IPR017930Myb domain
SMARTSM007176.3E-151363IPR001005SANT/Myb domain
PfamPF002491.5E-161461IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-241590IPR009057Homeodomain-like
CDDcd001671.63E-111661No hitNo description
PROSITE profilePS500904.8556289IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.7E-96590IPR009057Homeodomain-like
Gene3DG3DSA:3.40.50.1504.2E-46218415IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF036021.3E-44223412No hitNo description
SuperFamilySSF533351.71E-29223412IPR029063S-adenosyl-L-methionine-dependent methyltransferase
CDDcd024400.00842272355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGRPRCCDKA NVKRGPWTPE EDAKILAYVA SHGIGNWTSV PQKAGLNRCG KSCRLRWTNY  60
LRPDLKHDNF TPEEEECILE LHKTIGSRWC LKSLRGFFLI VPYNIHVFDW SEVLKKDGSS  120
GIHGMAKANL LRTNSPPPRL QFSQISTTSR CPFVITLSYK PRSGNNVDSE KKRDFLEEYG  180
LNPDDYLTKP SSKIKRREQG RTGNGKEMPA EEPRTFRETH KLLQVLGGNA RRKKLLSPKG  240
IDVRPMMEVV KAATFSILQA AGGSPQYLRP GRWLDLYSGT GSVGIEAMSR GCSEVHFVEM  300
DPWVISDVLR PNLESTGFLD VSVIHSVRVE TFLENADRLV GKHGIFDYIS VTPPYTLVDY  360
AVLMAQISKS SIVGENTFIV VEYPLRTDML DSCGHLVKIA DRRFGRTHLA IYGPTWAQKK  420
NLCCFRLFLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-161489781B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45655.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098551.11e-151uncharacterized protein LOC105177194
RefseqXP_011098552.11e-151uncharacterized protein LOC105177194
RefseqXP_011098553.11e-151uncharacterized protein LOC105177194
TrEMBLA0A2Z7CG210.0A0A2Z7CG21_9LAMI; Uncharacterized protein
STRINGXP_009766048.11e-148(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-47MYB family protein