PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45161.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 368aa    MW: 41240 Da    PI: 7.754
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45161.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35221142103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i+
    KZV45161.1  22 FLTKTYQLVDDPTTDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 109
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    KZV45161.1 110 RRKTA 114
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3814106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-6018111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-3419111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-202245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-206072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MLDNCEGILL SLDSQKSVPA PFLTKTYQLV DDPTTDHIVS WGEDDATFVV WRPPEFARDL  60
LPNYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANEFFKKG EKHLLCEIHR RKTAQPPPLS  120
FNHHGHQGHH HPSLGHHSIN GQSTFFPYSS RDSISPPDSD EQQQPNTWCD SPPVASPNGS  180
GSAVTNVATC GGNSSYMALS EDNERLRRNN TMLVSELTHM RKLYNDIIYF VQNHVKPVAP  240
SSSYHNSSIF LNNSAKSSTA TNPFNDGGGG SSMLQKPLNQ LIGYTNPHRG NAYLGSININ  300
SSSPRSKISQ ASVTILDENE HSRTKLFGVP LPYSKKRLHP EYSSSMETNK ARLVLEKDDL  360
GLNLMPPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-211811326131Heat shock factor protein 1
5d5v_B2e-211811326131Heat shock factor protein 1
5d5v_D2e-211811326131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45161.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074417.11e-174LOW QUALITY PROTEIN: heat stress transcription factor B-4-like
SwissprotQ9C6351e-114HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2Z7CDL70.0A0A2Z7CDL7_9LAMI; Heat stress transcription factor B-4
STRINGcassava4.1_010465m1e-161(Manihot esculenta)
STRINGXP_002510200.11e-161(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-110heat shock transcription factor B4