PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV45078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 278aa MW: 31030 Da PI: 7.7065 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.6e-19 | 141 | 195 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k KZV45078.1 141 RKKLRLSKEQAAVLEETFKEHSTLNPKQKMGLAKQLNLRPRQVEVWFQNRRARTK 195 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.3 | 6.8e-41 | 141 | 230 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEe+F+e+++L+p++K+ la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev++Lr +l KZV45078.1 141 RKKLRLSKEQAAVLEETFKEHSTLNPKQKMGLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVNDLR-AL 230 69*************************************************************************************9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 6.1E-22 | 1 | 117 | IPR006712 | HD-ZIP protein, N-terminal |
PROSITE profile | PS50071 | 17.281 | 137 | 197 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-14 | 139 | 201 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-18 | 140 | 206 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-18 | 141 | 195 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-16 | 141 | 195 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.06E-15 | 141 | 198 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 172 | 195 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.0E-10 | 197 | 231 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.0E-25 | 197 | 240 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MAGKDDCLGL SLSLRCPENL NPDPLPPPPP TRLAVSAPFP LNLLRSPSPF MQLQKISRTD 60 AFQTVAARQA EPRAFHVGID INRTTSVVGC DEEDEEGMVT SPNSTVSSIS GKRSEREEND 120 GERAASSSME IEEDGGDAAS RKKLRLSKEQ AAVLEETFKE HSTLNPKQKM GLAKQLNLRP 180 RQVEVWFQNR RARTKLKQTE VDCEYLRRCC ENLTEENRRL QKEVNDLRAL KLSPHFYSNM 240 TPPTTLTMCP RCEHVASAAA PSRQPPTWAA AESDRSKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 145 | SRKKLRL |
2 | 189 | 197 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV45078.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089804.1 | 1e-127 | homeobox-leucine zipper protein HAT4 | ||||
Swissprot | P46602 | 1e-88 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A2Z7CDR1 | 0.0 | A0A2Z7CDR1_9LAMI; HD-ZIP protein | ||||
STRING | Migut.B01552.1.p | 1e-103 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1118 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 3e-91 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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