PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44431.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 289aa    MW: 32204 Da    PI: 8.5939
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44431.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019227249123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C k Fs+   L  H+r+H
  KZV44431.1 227 HTCKICLKKFSSGQALGGHQRRH 249
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-8154178No hitNo description
PfamPF139128.6E-6156179IPR007087Zinc finger, C2H2
PROSITE profilePS501579.847156183IPR007087Zinc finger, C2H2
SMARTSM003550.039156178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-8222249No hitNo description
Gene3DG3DSA:3.30.160.608.1E-4225252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-9226250IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39227255IPR007087Zinc finger, C2H2
SMARTSM003550.2227249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MNIEAGRTGL KLRFKLPRKT MAGENLDSTA DLSRSLIPWQ GKARRTMRRE VSPPPRVPSS  60
EHQNRSPQAV IISGKRKLEE TDQNGSVEKS QKTDSASMDY PIISSGANHD GESGVSEIQS  120
NSIDEISVGT KSNSSNKRCT DESEDQVTSV VLPKIYACSF CSKTFSSHLA LGGHKSSHNK  180
FQMIIYNAID LRPRKRPSMI TNACHQQPRD DRDIAANPES VGDDRTHTCK ICLKKFSSGQ  240
ALGGHQRRHW TGNMPDQKKT TPAPKILDFD LNELPDEQDE DPSSYFLFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7CBL60.0A0A2Z7CBL6_9LAMI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-15C2H2-like zinc finger protein