PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

HD-ZIP

Protein Properties

Length: 252aa MW: 29094.4 Da PI: 5.1426

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV41670.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.5e-19	20	71	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+ F ++ ++ +++ +LA+ lgL+ rqV +WFqNrRa++k KZV41670.1 20 RRFSDEQIKSLESIFDQETKLESRKKMQLARDLGLQPRQVAIWFQNRRARWK 71 58*************************************************9 PP
2	HD-ZIP_I/II	118.1	4.8e-38	18	109	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + rr+s+eq+k+LE+ F++e+kLe+++K++lar+Lglqprqva+WFqnrRAR+k++q+E++y++Lk++yd+l + ++L+ke+e+L+++l+e KZV41670.1 18 NDRRFSDEQIKSLESIFDQETKLESRKKMQLARDLGLQPRQVAIWFQNRRARWKARQIEQEYKVLKANYDNLYLHFDHLKKENESLQRQLQE 109 579**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-18	11	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.589	13	73	IPR001356	Homeobox domain
SMART	SM00389	2.2E-16	15	77	IPR001356	Homeobox domain
CDD	cd00086	1.18E-14	17	74	No hit	No description
Pfam	PF00046	5.4E-17	20	71	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-19	20	80	IPR009057	Homeodomain-like
PRINTS	PR00031	9.1E-6	44	53	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	48	71	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.1E-6	53	69	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.7E-13	74	112	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEALDQKAKS QEKKRIKNDR RFSDEQIKSL ESIFDQETKL ESRKKMQLAR DLGLQPRQVA 60 IWFQNRRARW KARQIEQEYK VLKANYDNLY LHFDHLKKEN ESLQRQLQEL SGVEKNLDED 120 DLNDHRVGGG FQANIPNDEN ISKPFGKVED REELVCWDED EVEISHLASP QTWDNLCSDG 180 LFEQSLGITQ NCRPPIHPST VSLRPQSAVR VTLKRGKEKG LYGSSSVVVA DSTISKDQNF 240 DDVSDVEEMG TC

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV41670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075911.1	4e-58	homeobox-leucine zipper protein ATHB-12-like isoform X2
TrEMBL	A0A2Z7CAH9	0.0	A0A2Z7CAH9_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-39	homeobox 7