PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV40922.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Dof

Protein Properties

Length: 269aa MW: 29785.1 Da PI: 8.052

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV40922.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8e-40	19	80	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss KZV40922.1 19 KEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 80 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	10	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.8E-34	21	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEEIATNTCP KERKVRPHKE QALNCPRCNS TNTKFCYYNN YSLSQPRYFC KTCRRYWTEG 60 GSLRNIPVGG GSRKNKRSSS NSISSKNLVA LPTPDHQIPQ NPSKIQDQAQ DLNLGFSTIT 120 PHDFKTITEL IQVPRFEHQV KELHNHPSSS TNSSALELLN GITSTSRGLL NPCFMSMPVI 180 DPSTVYSSGF SLPEFKPSLS FSLDGLGGNY GNFQGVQEAN GKLLFPYQDL NKQVSTNTED 240 ADEQNRSDQI GDSTGYWNGM IGGGTGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV40922.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070363.1	1e-100	dof zinc finger protein DOF4.6
Swissprot	Q8LAP8	3e-53	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A2Z7C267	0.0	A0A2Z7C267_9LAMI; F-box family protein isoform 1
STRING	EOY23946	1e-95	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	7e-48	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]