PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39836.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family BBR-BPC
Protein Properties Length: 365aa    MW: 40786.7 Da    PI: 10.2819
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39836.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind375.78.1e-1154536516301
   GAGA_bind  16 pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksid 109
                 ++ +s+k     q+m++++erda+i+ernlalsekkaa+ erdma lqrd+a++ern+a++erdn+++al+++en+++    s +p+g+q+ +g k+++
  KZV39836.1  45 QHqPSMK-----QIMAIMTERDAAIQERNLALSEKKAALTERDMAILQRDSAISERNNAIIERDNAIAALQYRENAMNngnfSPCPPGCQIARGIKHVH 138
                 3335566.....****************************************************************99999899*************** PP

   GAGA_bind 110 slqq.lse....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader................ 186
                 + qq +++     ql  + v+ +   +  +++ i ++ +++  + +++k +r+k+pke k   + kk++ks kkvkke++d +                
  KZV39836.1 139 HPQQqVHHpqqhVQLPLQHVQlQGPYNPRDSHVIADTIPTSPVALEPSKARRTKRPKEAKPATPVKKTSKSLKKVKKEGDDLNktmlpkpeewnggldm 237
                 **995666765555555666666778889999999999***99***********************9************995559************** PP

   GAGA_bind 187 .............skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                              sk ++k+++l+ln+v++De+t+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS++af+klL++L
  KZV39836.1 238 gsgsddlnrqlaaSKPDWKDQGLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARVGGRKMSGSAFTKLLSRL 336
                 *************************************************************************************************** PP

   GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 aaeG+dlsnpvDLk+ WAkHGtn+++ti+
  KZV39836.1 337 AAEGHDLSNPVDLKENWAKHGTNRYITIK 365
                 ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.1E-991365IPR010409GAGA-binding transcriptional activator
SMARTSM012266.1E-1551365IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDDSGQRENG RNKPPQGQIL DVKRVKGRLP IGVFVKMFWF QWLMQHQPSM KQIMAIMTER  60
DAAIQERNLA LSEKKAALTE RDMAILQRDS AISERNNAII ERDNAIAALQ YRENAMNNGN  120
FSPCPPGCQI ARGIKHVHHP QQQVHHPQQH VQLPLQHVQL QGPYNPRDSH VIADTIPTSP  180
VALEPSKARR TKRPKEAKPA TPVKKTSKSL KKVKKEGDDL NKTMLPKPEE WNGGLDMGSG  240
SDDLNRQLAA SKPDWKDQGL GLNQVAFDET TMPVPVCSCT GVLRPCYKWG NGGWQSSCCT  300
TNLSMYPLPA VPNKRHARVG GRKMSGSAFT KLLSRLAAEG HDLSNPVDLK ENWAKHGTNR  360
YITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312138.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_009803495.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803496.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803498.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803499.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803500.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803501.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803502.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803503.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803504.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803505.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803506.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803507.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451534.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451535.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451536.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451537.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451538.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451539.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451540.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9991e-134BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A2Z7BZZ80.0A0A2Z7BZZ8_9LAMI; Uncharacterized protein
STRINGXP_009803495.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-130basic pentacysteine 6