PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV39662.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

MYB_related

Protein Properties

Length: 308aa MW: 33122.2 Da PI: 6.5276

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV39662.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	101	147	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+ l++ + + G+g+W+ I+r k+Rt+ q+ s+ qky KZV39662.1 101 RVPWTEEEHRLFLVGLQNVGKGDWRGISRNYVKTRTPTQVASHAQKY 147 789*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.726	96	152	IPR017930	Myb domain
SuperFamily	SSF46689	7.33E-17	98	153	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-16	100	150	IPR006447	Myb domain, plants
SMART	SM00717	2.7E-9	100	150	IPR001005	SANT/Myb domain
Pfam	PF00249	7.3E-11	101	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	101	147	IPR009057	Homeodomain-like
CDD	cd00167	1.56E-8	103	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSMLSESPSA AVSGGGSGSA VCGGSGEIIL FGVRVKVDPM RKSVSMNNLS EYEPVNGDKS 60 STNSDRSNDL PKTAVVEDGG AVGYASADDA LPQPVHGSRE RVPWTEEEHR LFLVGLQNVG 120 KGDWRGISRN YVKTRTPTQV ASHAQKYFLR RSNLNRRRRR TSLFDITTDS VTAMQIEEEG 180 SQQERPAQPV PPATAPSVPS ASNINGLSTV PFPITVSPVM LSMQGGNPME NPTSCQRDPV 240 NKSPPMLLMP TSPTMIDLNL NQQVPFEPSP ISLRLSLSSG QDQHSTRDDS AFLVIPGFKS 300 GDTLISVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	RRRRRT

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV39662.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071772.1	1e-110	transcription factor MYB1R1
Swissprot	Q2V9B0	3e-70	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2Z7BYE4	0.0	A0A2Z7BYE4_9LAMI; Homeodomain-like superfamily protein
STRING	Migut.D01891.1.p	1e-85	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	2e-47	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]