PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39653.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24370 Da    PI: 9.1438
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39653.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.71.3e-221663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+ gk++ +
  KZV39653.1 16 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAGKVFSF 63
                58888899*************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-34766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-27784IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.936767IPR002100Transcription factor, MADS-box
CDDcd002652.73E-35879No hitNo description
PRINTSPR004049.6E-19929IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAKKPSMGRQ KIKIAKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPAGKV  60
FSFGHPNVEL IVERFLNLNP SATTNSFHLM EAQRNVTVRE LNMQLGQILN ELEMERKRGE  120
ALDQMRKSNQ SHYWWEGPID KHELEQLQDA IQELKKNVGG QVAKVMSQVA TYSLLLGPDD  180
GGKDGVFDQY EIKPGQVFVG SNAVVGNNNF GYCHGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14792187MEF2C
5f28_B1e-14792187MEF2C
5f28_C1e-14792187MEF2C
5f28_D1e-14792187MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088151.11e-100agamous-like MADS-box protein AGL62
TrEMBLA0A2Z7BYD91e-160A0A2Z7BYD9_9LAMI; Uncharacterized protein
STRINGXP_009628464.19e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-50AGAMOUS-like 62