PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39126.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family SBP
Protein Properties Length: 415aa    MW: 46364.9 Da    PI: 8.1793
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39126.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1322.1e-41153229177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cqv +C++dls+ k+yh+rhkvC+ hsk++vv+v+g++qrfCqqCsrfh l+efDe+krsCr+rLa+hnerrrk+q
  KZV39126.1 153 VCQVLDCNKDLSSSKDYHKRHKVCDLHSKSSVVIVDGIQQRFCQQCSRFHLLREFDEGKRSCRKRLAGHNERRRKPQ 229
                 6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.4E-33150215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.248151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-39152232IPR004333Transcription factor, SBP-box
PfamPF031105.1E-31154227IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MESLSYGTEG KGLAVVQLDD ACVRSGNVLK RWGRERLCVE PILPDIMRKF DLSEESSKNL  60
GYFTDDGSTK SFVSTSTNTS TSFMEFGARF STPAMKADNQ NLVPTSFMSD NLAARKDRST  120
YQFDVENSVL CSLEHSVAAK RARTSNSLSL VPVCQVLDCN KDLSSSKDYH KRHKVCDLHS  180
KSSVVIVDGI QQRFCQQCSR FHLLREFDEG KRSCRKRLAG HNERRRKPQL DAHLGSSYFA  240
TDLSRTPFLF PKFLQVGSFH GDPMNHRFGP SLSNSLLNKN RLFSAQEVSA ESNSSGALSL  300
LSSQSQNLPS NSTDVSVKHP LIFLDNQHSK NFAESFSNTT LKNFTSNVLP EVLDAGVSIG  360
LDIRQDILSQ EPKAPEGANT VDLLQLSFHL QRVEHQRYST EVNLENGHFR HTAIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-30145227284squamosa promoter binding protein-like 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39126.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070914.21e-113squamosa promoter-binding-like protein 6
TrEMBLA0A2Z7BXW10.0A0A2Z7BXW1_9LAMI; Squamosa promoter-binding-like protein 6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-43SBP family protein