PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

MYB_related

Protein Properties

Length: 272aa MW: 30370.3 Da PI: 8.7504

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV37410.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.4	3.3e-13	62	106	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W+++E++++++a +++ + Wk+I + +g +t q++s+ qky KZV37410.1 62 RESWSEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 106 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.57E-15	56	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.333	57	111	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-7	59	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-17	60	109	IPR006447	Myb domain, plants
SMART	SM00717	6.8E-11	61	109	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-11	62	106	IPR001005	SANT/Myb domain
CDD	cd00167	2.70E-8	64	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MVSVYPNPSP SQDFTQFYGC YIGGDPMRTG ITAHFPESSS TSTGTEDPSK KIRKPYTITK 60 SRESWSEQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR SHAQKYFQKV LKNGKSEHVP 120 PPRPKRKANH PYPQKAPKNA ISVTAGVAHS VTAGVVRSCA AISAQPNSLP VHSNPVGCVH 180 LSPWMETEHL SRVMPDFAQV YEFIGSVFDN SASDHLARLK KMDPINVQTV TTLMKNLAIN 240 LVSPEFEDHR RLLSSYQASA ETYDMGSATD FE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV37410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093085.1	1e-107	protein REVEILLE 6 isoform X2
Swissprot	Q6R0H0	3e-84	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	A0A2Z7BYX0	0.0	A0A2Z7BYX0_9LAMI; Protein REVEILLE 3
STRING	Solyc01g095030.2.1	2e-98	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA998	24	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	1e-86	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]