PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV37374.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

MYB_related

Protein Properties

Length: 1714aa MW: 188277 Da PI: 6.2541

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV37374.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.2e-08	817	858	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+ E e+++d + +G++ +++Ia+ + ++t +c+++++k KZV37374.1 817 TWTPTEREIFIDKLATFGKD-FRRIASFLD-HKTIADCVEFYYK 858 7***************99.*****.*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.46E-13	801	862	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.498	813	864	IPR017884	SANT domain
SMART	SM00717	7.2E-8	814	862	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-5	817	858	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.9E-4	817	862	IPR009057	Homeodomain-like
SMART	SM00717	9	1030	1091	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.01E-5	1031	1065	IPR009057	Homeodomain-like
CDD	cd00167	0.00319	1034	1066	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1714 aa Download sequence Send to blast
MPPEPYPWDR RDFRKHERSG SDPRFGGGFG GSGPPRWRDQ QHYNAPPAHR TSYHQNHHHQ 60 QQQRWYSDFR TRSLPPVHGK QAGWHNYPDE GSQAFLPFGS RFSDRNIEEE NFRSYRSFSD 120 GGRHGRNSRE NRVSFSQKDW KAASWETFAA STPGRPNNEL NDQRLVENNK KSDESNCVTD 180 CLKSENLSQP SDSLNQLEPS CPLRKEQQDK DSGNSDGLCA NGLESTGKLE KENCLSSVDW 240 KPLKWSRSGS LSSRGSSLSS SSSKSMAVDS SEIVTEIQEN KTVPAQSPIA EAATCVMTAA 300 PASSEETSSR KKPRLGWGEG LAKYEKKKVD SPEDGAARNG LAISLSSIEE TVPSHDMNLL 360 DKSPRVAGFL DFSSPATPSS VGCSSSTGIE EKESHRAVNM DHDTANLSCS PSIVSQTLNE 420 RPIFNLENLE LTSFASVSSL ICDLLQSDDL SSKGSNYLGA NSMNKLLLWK VDLLKALETT 480 ETEIDSLETE LKSLIPGLGD SHPHPDSSSL QPKKFLLKPC KEQGTSSNFT HKPTPLYLVS 540 SRDVFVESTL GVVEDAHVRL KSENFDSPSS ATSKYIEVAS SGDDVYPSQT SQGSVNLDVK 600 NPRNLNENYV GNGVRDEENV GRADNFEVIC LNRCSDLSSV MDDDICDIYD SILASNRVSA 660 NGASEALYKL LPSKQCFTGS KVSCLHSVPS LIKKKHFMRK QFLRFKHFWN EGRLVSVRKL 720 QAKSHKKLDL VGHKKHRYGR TRMCSLAGSS RTVPAEDIID FVNGLLSESS FEPCRNALKM 780 PALILDKKEM QMSRFITSNG LVEDPCAVER ERAMINTWTP TEREIFIDKL ATFGKDFRRI 840 ASFLDHKTIA DCVEFYYKNH KSDSFEKARK KPEAVKQRKS QSTTYLVATG KRWNREAVAA 900 SLDILGEASA IAANADGIED RNRPSIFSLG ACSAYKAPPR CHDDQSQRSN SLDFYRNERE 960 AVAADVLAGI CGSLSSEAMS SCITSSLDHG DGYQDSRYQR VGFSTKRSLN PEITQIVDDE 1020 CSDESCGEMD PTDWTDVERS IFIQAVSSYG KDFGMISRCV KTRSRVNGGG SDIEDASVVE 1080 TGSLIYNEVS KGQTEEDLPS PDRKSSHAST VVSGKPILKP DSKTCEELIG LNSPDPMDSE 1140 FGVNNLLLNN PQVDDRPVSG VNGQNGATNV PVSVKEIGVM GVSSVSESLH GVEEADDYDL 1200 LNGSTGVEKM TSIEITEGHQ TKRNEGSDLS SAEGKSADQK TEEKDANCTE VCGTDWSATR 1260 MKSESHHTES SSCPGVGHSS MQVDNVSGCQ RRADLRSTTE DASKVRSLPR NSHIASLRSS 1320 TLFSVPIKYQ KLALPSVGIN GTDDDHSQNI VRTCDCQQHI SGHSLPDHVE SSQILRGYPV 1380 SVPMMNEEVK ACVGCQKTVL QHNASQPDGN LHIGCPSEPL LQKCNNSGRN AQMFEASHAA 1440 QDQTGDHSRP QPNCSSGFEK PSSNGDVKLF GKILVPSQQT QNSCGQLTDD NGQNHKSGSP 1500 LLSLKFNNEQ NVSFESSVSK LDRRNYCGSD DVQARNFSFW DGNMMKTGLP PIPDSMLLLS 1560 KYPAAFSSYT IPSVKIEHPP LHGIVTSNDR PLNGVSIYPT KDLCSSNGVA AYLKNQEVQQ 1620 PFTINMKNPQ AMPFPEMQRQ NGFHIVPGLQ QQSRGVVEMN IGRGGVIVGG QCSSVSDPVA 1680 AIKMHYAQTE QFSLQAGNII KDDDTWRSKG DIGR

Sequence ? help Back to Top

Protein Sequence Length: 1714 aa Download sequence Send to blast

MPPEPYPWDR RDFRKHERSG SDPRFGGGFG GSGPPRWRDQ QHYNAPPAHR TSYHQNHHHQ  60
QQQRWYSDFR TRSLPPVHGK QAGWHNYPDE GSQAFLPFGS RFSDRNIEEE NFRSYRSFSD  120
GGRHGRNSRE NRVSFSQKDW KAASWETFAA STPGRPNNEL NDQRLVENNK KSDESNCVTD  180
CLKSENLSQP SDSLNQLEPS CPLRKEQQDK DSGNSDGLCA NGLESTGKLE KENCLSSVDW  240
KPLKWSRSGS LSSRGSSLSS SSSKSMAVDS SEIVTEIQEN KTVPAQSPIA EAATCVMTAA  300
PASSEETSSR KKPRLGWGEG LAKYEKKKVD SPEDGAARNG LAISLSSIEE TVPSHDMNLL  360
DKSPRVAGFL DFSSPATPSS VGCSSSTGIE EKESHRAVNM DHDTANLSCS PSIVSQTLNE  420
RPIFNLENLE LTSFASVSSL ICDLLQSDDL SSKGSNYLGA NSMNKLLLWK VDLLKALETT  480
ETEIDSLETE LKSLIPGLGD SHPHPDSSSL QPKKFLLKPC KEQGTSSNFT HKPTPLYLVS  540
SRDVFVESTL GVVEDAHVRL KSENFDSPSS ATSKYIEVAS SGDDVYPSQT SQGSVNLDVK  600
NPRNLNENYV GNGVRDEENV GRADNFEVIC LNRCSDLSSV MDDDICDIYD SILASNRVSA  660
NGASEALYKL LPSKQCFTGS KVSCLHSVPS LIKKKHFMRK QFLRFKHFWN EGRLVSVRKL  720
QAKSHKKLDL VGHKKHRYGR TRMCSLAGSS RTVPAEDIID FVNGLLSESS FEPCRNALKM  780
PALILDKKEM QMSRFITSNG LVEDPCAVER ERAMINTWTP TEREIFIDKL ATFGKDFRRI  840
ASFLDHKTIA DCVEFYYKNH KSDSFEKARK KPEAVKQRKS QSTTYLVATG KRWNREAVAA  900
SLDILGEASA IAANADGIED RNRPSIFSLG ACSAYKAPPR CHDDQSQRSN SLDFYRNERE  960
AVAADVLAGI CGSLSSEAMS SCITSSLDHG DGYQDSRYQR VGFSTKRSLN PEITQIVDDE  1020
CSDESCGEMD PTDWTDVERS IFIQAVSSYG KDFGMISRCV KTRSRVNGGG SDIEDASVVE  1080
TGSLIYNEVS KGQTEEDLPS PDRKSSHAST VVSGKPILKP DSKTCEELIG LNSPDPMDSE  1140
FGVNNLLLNN PQVDDRPVSG VNGQNGATNV PVSVKEIGVM GVSSVSESLH GVEEADDYDL  1200
LNGSTGVEKM TSIEITEGHQ TKRNEGSDLS SAEGKSADQK TEEKDANCTE VCGTDWSATR  1260
MKSESHHTES SSCPGVGHSS MQVDNVSGCQ RRADLRSTTE DASKVRSLPR NSHIASLRSS  1320
TLFSVPIKYQ KLALPSVGIN GTDDDHSQNI VRTCDCQQHI SGHSLPDHVE SSQILRGYPV  1380
SVPMMNEEVK ACVGCQKTVL QHNASQPDGN LHIGCPSEPL LQKCNNSGRN AQMFEASHAA  1440
QDQTGDHSRP QPNCSSGFEK PSSNGDVKLF GKILVPSQQT QNSCGQLTDD NGQNHKSGSP  1500
LLSLKFNNEQ NVSFESSVSK LDRRNYCGSD DVQARNFSFW DGNMMKTGLP PIPDSMLLLS  1560
KYPAAFSSYT IPSVKIEHPP LHGIVTSNDR PLNGVSIYPT KDLCSSNGVA AYLKNQEVQQ  1620
PFTINMKNPQ AMPFPEMQRQ NGFHIVPGLQ QQSRGVVEMN IGRGGVIVGG QCSSVSDPVA  1680
AIKMHYAQTE QFSLQAGNII KDDDTWRSKG DIGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	5e-15	775	866	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	5e-15	775	866	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV37374.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548929.1	0.0	uncharacterized protein LOC105161106
TrEMBL	A0A2Z7BSK9	0.0	A0A2Z7BSK9_9LAMI; Uncharacterized protein
STRING	Migut.F01767.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5904	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-102	MYB family protein