PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37362.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 199aa    MW: 21605.5 Da    PI: 4.8943
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37362.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.52e-42431421100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lp+++r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++
  KZV37362.1  43 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPDDQRADAVNSMVYEANARLRDPVYGCAGAICQLQKQISELQAQLAKAQA 141
                 7***********************************************************************************************998 PP

      DUF260 100 e 100
                 +
  KZV37362.1 142 Q 142
                 7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.12442143IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-4243140IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MITGQAENTT TTSAAGEGSP SSSYSLSQDS STSSPPPAII LSPCAACKIL RRRCAEKCVL  60
APYFPPTEPL KFTIAHRVFG ASNIIKLLQE LPDDQRADAV NSMVYEANAR LRDPVYGCAG  120
AICQLQKQIS ELQAQLAKAQ AQVLNMHCQN ANLFELICQH TQLPLDDQQS VSPQPLLPNF  180
FYDNSSSFCP DDSILGLWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-424214810116LOB family transfactor Ramosa2.1
5ly0_B3e-424214810116LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075886.14e-79LOB domain-containing protein 1-like
SwissprotQ9LQR04e-69LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2Z7BRX21e-144A0A2Z7BRX2_9LAMI; LOB domain-containing protein 1-like
STRINGSolyc05g048740.2.12e-78(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-63LOB domain-containing protein 1